Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation (Q30456249)

26 September 2017

Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation (English)

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26 September 2017

Tyson A Clark

1

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author name string

Xingyu Lu

2

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26 September 2017

Khai Luong

3

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26 September 2017

Qing Dai

4

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26 September 2017

Matthew Boitano

5

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26 September 2017

Stephen W Turner

6

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26 September 2017

Chuan He

7

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26 September 2017

Jonas Korlach

8

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26 September 2017

22 January 2013

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26 September 2017

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26 September 2017

11

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26 September 2017

4

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https://scigraph.springernature.com/pub.10.1186/1741-7007-11-4

26 September 2017

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cites work

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

1 reference

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Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

20 June 2018

1 reference

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The methylomes of six bacteria

20 June 2018

1 reference

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Hybrid error correction and de novo assembly of single-molecule sequencing reads

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

A hybrid approach for the automated finishing of bacterial genomes

20 June 2018

1 reference

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Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Direct detection and sequencing of damaged DNA bases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

The discovery of 5-formylcytosine in embryonic stem cell DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

5-Hydroxymethylcytosine, the sixth base of the genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

MEME-ChIP: motif analysis of large DNA datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

A flexible and efficient template format for circular consensus sequencing and SNP detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Direct detection of DNA methylation during single-molecule, real-time sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Circos: an information aesthetic for comparative genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Real-time DNA sequencing from single polymerase molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

DNA methylation patterns and epigenetic memory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Roles of DNA adenine methylation in regulating bacterial gene expression and virulence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Restriction and modification systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598637

Real-time DNA sequencing from single polymerase molecules

20 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23339471

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1741-7007-11-4

1 reference

Dimensions Publication ID

26 September 2017

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1 reference

26 September 2017

1 reference