A pilot study for channel catfish whole genome sequencing and de novo assembly (Q30428651)

22 September 2017

A pilot study for channel catfish whole genome sequencing and de novo assembly (English)

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22 September 2017

whole genome sequencing

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6

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22 September 2017

5

Shikai Liu

1 reference

22 September 2017

3

Eric Peatman

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Huseyin Kucuktas

series ordinal

4

object named as

Huseyin Kucuktas

1 reference

22 September 2017

8

Zhanjiang Liu

1 reference

22 September 2017

Yanliang Jiang

1

1 reference

22 September 2017

Jianguo Lu

series ordinal

2

1 reference

22 September 2017

Fanyue Sun

series ordinal

7

1 reference

22 September 2017

language of work or name

English

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publication date

22 December 2011

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22 September 2017

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22 September 2017

12

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22 September 2017

629

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describes a project that uses

22 September 2017

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-629

0 references

cites work

Genome sequence and analysis of the tuber crop potato

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Comparative studies of de novo assembly tools for next-generation sequencing technologies

14 July 2018

1 reference

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Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

14 July 2018

1 reference

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The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

14 July 2018

1 reference

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A window into third-generation sequencing

14 July 2018

1 reference

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Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)

14 July 2018

1 reference

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De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads

14 July 2018

1 reference

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Assembly of large genomes using second-generation sequencing

14 July 2018

1 reference

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De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis

14 July 2018

1 reference

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Assembly algorithms for next-generation sequencing data

14 July 2018

1 reference

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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

14 July 2018

1 reference

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The sequence and de novo assembly of the giant panda genome

14 July 2018

1 reference

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Comparative analysis of catfish BAC end sequences with the zebrafish genome

14 July 2018

1 reference

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ABySS: a parallel assembler for short read sequence data

14 July 2018

1 reference

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Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

14 July 2018

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

14 July 2018

1 reference

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Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome

14 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

14 July 2018

1 reference

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Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

A BAC-based physical map of the channel catfish genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

A first generation BAC-based physical map of the channel catfish genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

Channel catfish immunoglobulins: repertoire and expression.

14 July 2018

1 reference

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From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

Genome sequencing in microfabricated high-density picolitre reactors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3266365

The skeletal muscle alpha-actin gene of channel catfish (Ictalurus punctatus) and its association with piscine specific SINE elements

14 July 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

14 July 2018

1 reference

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Basic local alignment search tool

14 July 2018

1 reference

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Repeat structure of the catfish genome: a genomic and transcriptomic assessment of Tc1-like transposon elements in channel catfish (Ictalurus punctatus).

14 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-629

Development of genomic resources in support of sequencing, assembly, and annotation of the catfish genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-629

Directed sequencing and annotation of three Dicentrarchus labrax L. chromosomes by applying Sanger- and pyrosequencing technologies on pooled DNA of comparatively mapped BAC clones.

21 January 2018

1 reference

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Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs

21 January 2018

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Third generation DNA sequencing: pacific biosciences' single molecule real time technology.

21 January 2018

1 reference

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Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species

21 January 2018

1 reference

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Characterization of an A/T-rich family of sequences from channel catfish (Ictalurus punctatus).

21 January 2018

1 reference

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26 November 2018

Identifiers

DOI

10.1186/1471-2164-12-629

1 reference

Dimensions Publication ID

22 September 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-629

1 reference

22 September 2017

1 reference