Real-space processing of helical filaments in SPARX. (Q30422668)

18 October 2017

Real-space processing of helical filaments in SPARX. (English)

1 reference

18 October 2017

5

1 reference

18 October 2017

1

Elmar Behrmann

1 reference

18 October 2017

Edward H Egelman

4

0 references

Pawel A Penczek

series ordinal

6

object named as

Pawel A Penczek

1 reference

18 October 2017

Guozhi Tao

2

1 reference

PMCID

3288516

18 October 2017

David L Stokes

series ordinal

3

1 reference

18 October 2017

11 January 2012

1 reference

Journal of Structural Biology

18 October 2017

1 reference

18 October 2017

177

1 reference

18 October 2017

302-313

1 reference

18 October 2017

2

1 reference

Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images

18 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Reconstruction of helical filaments and tubes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Fourier-Bessel reconstruction of helical assemblies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Fundamentals of three-dimensional reconstruction from projections

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Cryo-EM of macromolecular assemblies at near-atomic resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Cryo-EM studies of microtubule structural intermediates and kinetochore-microtubule interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

ParA2, a Vibrio cholerae chromosome partitioning protein, forms left-handed helical filaments on DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

The bipolar filaments formed by herpes simplex virus type 1 SSB/recombination protein (ICP8) suggest a mechanism for DNA annealing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Evidence for an interaction between the SH3 domain and the N-terminal extension of the essential light chain in class II myosins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

High-resolution Electron Microscopy of Helical Specimens: A Fresh Look at Tobacco Mosaic Virus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

SPARX, a new environment for Cryo-EM image processing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

The iterative helical real space reconstruction method: surmounting the problems posed by real polymers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Structural polymorphism in bacterial EspA filaments revealed by cryo-EM and an improved approach to helical reconstruction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Issues of resolution and polymorphism in single-particle reconstruction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Efficiency of 2D alignment methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

A robust algorithm for the reconstruction of helical filaments using single-particle methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Crystal structure of a vertebrate smooth muscle myosin motor domain and its complex with the essential light chain: visualization of the pre-power stroke state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Three-dimensional structure of functional motor proteins on microtubules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

An algorithm for straightening images of curved filamentous structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Structural relationships of actin, myosin, and tropomyosin revealed by cryo-electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Mass mapping with the scanning transmission electron microscope

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Visualization of alpha-helices in tobacco mosaic virus by cryo-electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Three-dimensional structure of the acetylcholine receptor by cryoelectron microscopy and helical image reconstruction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Three-dimensional reconstruction of single particles embedded in ice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Refining the Structure of the Halobacterium salinarum Flagellar Filament Using the Iterative Helical Real Space Reconstruction Method: Insights into Polymorphism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Gridding-based direct Fourier inversion of the three-dimensional ray transform.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3288516

Three-dimensional reconstruction of F-actin, thin filaments and decorated thin filaments

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22248449

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

F-actin is a helix with a random variable twist

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22248449

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure of helical RecA-DNA complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22248449

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2011.12.020

1 reference

18 October 2017

1 reference

18 October 2017

1 reference

PMCID

3288516