A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data (Q30415187)

21 June 2017

title

A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data (English)

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21 June 2017

Brian Jiménez-García

2

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Juan Fernández-Recio

object named as

Juan Fernández-Recio

series ordinal

3

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author name string

Laura Pérez-Cano

series ordinal

1

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21 June 2017

language of work or name

English

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publication date

8 May 2012

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21 June 2017

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21 June 2017

volume

80

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21 June 2017

issue

7

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21 June 2017

page(s)

1872-1882

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Present and future challenges and limitations in protein-protein docking

21 June 2017

cites work

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https://api.crossref.org/works/10.1002%2FPROT.24075

Principles of flexible protein-protein docking

21 January 2018

1 reference

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Prediction of protein-protein interactions by docking methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

The targets of CAPRI Rounds 13-19.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Docking and scoring protein interactions: CAPRI 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Protein-protein docking tested in blind predictions: the CAPRI experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

CAPRI: a Critical Assessment of PRedicted Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Structure of the 30S ribosomal subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Dissection and prediction of RNA-binding sites on proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Macromolecular modeling with rosetta

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Rosetta in CAPRI rounds 13-19.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

MDockPP: A hierarchical approach for protein-protein docking and its application to CAPRI rounds 15-19

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Prediction and scoring of docking poses with pyDock.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Size, shape, and flexibility of RNA structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Protein–protein docking benchmark version 4.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

A protein-DNA docking benchmark

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

SCOR: a Structural Classification of RNA database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

PRIDB: a Protein-RNA interface database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Protein structure modeling with MODELLER

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

ModeRNA: a tool for comparative modeling of RNA 3D structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Data Deposition and Annotation at the Worldwide Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

Principles of docking: An overview of search algorithms and a guide to scoring functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24075

21 January 2018

Identifiers

DOI

10.1002/PROT.24075

1 reference

release_vx6w2xzvpbfm3dkgs56jzifkw4

21 June 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vx6w2xzvpbfm3dkgs56jzifkw4

mapped directly with Wikidata item

24 November 2022

based on heuristic

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