LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains (Q30405208)

16 October 2017

LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains (English)

1 reference

16 October 2017

6

1 reference

16 October 2017

Andrew Bent

8

0 references

author name string

Laura Helft

1

1 reference

16 October 2017

Vignyan Reddy

2

1 reference

16 October 2017

Xiyang Chen

3

1 reference

16 October 2017

Teresa Koller

4

1 reference

16 October 2017

Luca Federici

5

1 reference

16 October 2017

Rishabh Gupta

7

1 reference

16 October 2017

language of work or name

English

0 references

publication date

18 July 2011

1 reference

16 October 2017

1 reference

16 October 2017

6

1 reference

16 October 2017

7

1 reference

16 October 2017

e21614

1 reference

Creative Commons Attribution 4.0 International

16 October 2017

start time

18 July 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Arabidopsis thaliana pattern recognition receptors for bacterial elongation factor Tu and flagellin can be combined to form functional chimeric receptors.

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20 June 2018

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Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer

20 June 2018

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High-affinity lamprey VLRA and VLRB monoclonal antibodies

20 June 2018

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Early molecular events in PAMP-triggered immunity.

20 June 2018

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Recent advances in PAMP-triggered immunity against bacteria: pattern recognition receptors watch over and raise the alarm

20 June 2018

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Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen

20 June 2018

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A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors

20 June 2018

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In the trenches of plant pathogen recognition: Role of NB-LRR proteins.

20 June 2018

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Integration of evolutionary and desolvation energy analysis identifies functional sites in a plant immunity protein

20 June 2018

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The structural basis of lipopolysaccharide recognition by the TLR4-MD-2 complex

20 June 2018

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The leucine-rich repeat domain in plant innate immunity: a wealth of possibilities

20 June 2018

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Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

20 June 2018

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News from the frontline: recent insights into PAMP-triggered immunity in plants

20 June 2018

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NOD-like receptors (NLRs): bona fide intracellular microbial sensors

20 June 2018

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The Nod-like receptor (NLR) family: a tale of similarities and differences

20 June 2018

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Structural Basis of Toll-Like Receptor 3 Signaling with Double-Stranded RNA

20 June 2018

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The leucine-rich repeat structure.

20 June 2018

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NLR, the nucleotide-binding domain leucine-rich repeat containing gene family

20 June 2018

1 reference

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Flagellin signalling in plant immunity

20 June 2018

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Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

20 June 2018

1 reference

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Structural insights into the Slit-Robo complex

20 June 2018

1 reference

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Comparative genomics of leucine-rich repeats containing G protein-coupled receptors and their ligands

20 June 2018

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Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.

20 June 2018

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

20 June 2018

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PAML 4: phylogenetic analysis by maximum likelihood

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Mechanism of auxin perception by the TIR1 ubiquitin ligase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

20 June 2018

The plant immune system

1 reference

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Consensus design as a tool for engineering repeat proteins.

20 June 2018

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Functional analysis of receptor-like kinases in monocots and dicots.

20 June 2018

1 reference

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Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Structural basis of the Cks1-dependent recognition of p27(Kip1) by the SCF(Skp2) ubiquitin ligase

20 June 2018

1 reference

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Ribonuclease inhibitor: structure and function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The Arabidopsis F-box protein TIR1 is an auxin receptor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The F-box protein TIR1 is an auxin receptor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Role of extracytoplasmic leucine rich repeat proteins in plant defence mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Structure of human follicle-stimulating hormone in complex with its receptor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Toll-like receptors in innate immunity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Coot: model-building tools for molecular graphics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Innate immunity in Arabidopsis thaliana: lipopolysaccharides activate nitric oxide synthase (NOS) and induce defense genes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The ankyrin repeat as molecular architecture for protein recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Bacterial disease resistance in Arabidopsis through flagellin perception

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Leucine-rich repeat receptor kinases in plants: structure, function, and signal transduction pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Prediction of functional sites in proteins using conserved functional group analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Plant hormone binding sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Designing repeat proteins: well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The crystal structure of polygalacturonase-inhibiting protein (PGIP), a leucine-rich repeat protein involved in plant defense

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Modulation of alpha-thrombin function by distinct interactions with platelet glycoprotein Ibalpha

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The Pfam protein families database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The leucine-rich repeat as a protein recognition motif

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

The specificity of polygalacturonase-inhibiting protein (PGIP): a single amino acid substitution in the solvent-exposed beta-strand/beta-turn region of the leucine-rich repeats (LRRs) confers a new recognition capability.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Molecular recognition of human angiogenin by placental ribonuclease inhibitor--an X-ray crystallographic study at 2.0 A resolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Mechanism of ribonuclease inhibition by ribonuclease inhibitor protein based on the crystal structure of its complex with ribonuclease A

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Main-chain bond lengths and bond angles in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

Optimal alignments in linear space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3138743

F-box-like domains are present in most poxvirus ankyrin repeat proteins

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

The N terminus of bacterial elongation factor Tu elicits innate immunity in Arabidopsis plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

The Arabidopsis receptor kinase FLS2 binds flg22 and determines the specificity of flagellin perception.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Identification and mutational analysis of Arabidopsis FLS2 leucine-rich repeat domain residues that contribute to flagellin perception.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Optimal docking area: a new method for predicting protein-protein interaction sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Structure-function analysis of cf-9, a receptor-like protein with extracytoplasmic leucine-rich repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Characterization of the complex locus of bean encoding polygalacturonase-inhibiting proteins reveals subfunctionalization for defense against fungi and insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Mutations in an auxin receptor homolog AFB5 and in SGT1b confer resistance to synthetic picolinate auxins and not to 2,4-dichlorophenoxyacetic acid or indole-3-acetic acid in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Systematic mutagenesis of the leucine-rich repeat (LRR) domain of CCR4 reveals specific sites for binding to CAF1 and a separate critical role for the LRR in CCR4 deadenylase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Polygalacturonase inhibiting proteins: players in plant innate immunity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

The polygalacturonase-inhibiting protein PGIP2 of Phaseolus vulgaris has evolved a mixed mode of inhibition of endopolygalacturonase PG1 of Botrytis cinerea

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0021614

Genetic dissection of basal resistance to Pseudomonas syringae pv. phaseolicola in accessions of Arabidopsis

21 January 2018

1 reference

12 December 2020

Plant development is regulated by a family of auxin receptor F box proteins

1 reference

12 December 2020

Three-dimensional window analysis for detecting positive selection at structural regions of proteins

1 reference

12 December 2020

Plants have a sensitive perception system for the most conserved domain of bacterial flagellin

1 reference

12 December 2020

FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0021614

Identifiers

DOI

1 reference

16 October 2017

0 references

1 reference

16 October 2017

1 reference