SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison (Q30389394)

13 October 2017

SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison (English)

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13 October 2017

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1 reference

4

Philip E Bourne

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Lei Xie

series ordinal

2

object named as

Lei Xie

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13 October 2017

Jingyuan Ren

1

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PMCID

2896174

13 October 2017

Wilfred W Li

series ordinal

3

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PMCID

2896174

13 October 2017

language of work or name

English

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publication date

19 May 2010

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13 October 2017

Nucleic Acids Research

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13 October 2017

38

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13 October 2017

W441-4

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13 October 2017

Web Server issue

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Creative Commons Attribution-NonCommercial 2.5 Generic

13 October 2017

start time

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Chemical phylogenetics of histone deacetylases

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A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology

14 July 2018

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fPOP: footprinting functional pockets of proteins by comparative spatial patterns

14 July 2018

1 reference

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Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis

14 July 2018

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A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors

14 July 2018

1 reference

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A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

A quantitative analysis of kinase inhibitor selectivity

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

SitesBase: a database for structure-based protein-ligand binding site comparisons

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

ProFunc: a server for predicting protein function from 3D structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

14 July 2018

1 reference

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FATCAT: a web server for flexible structure comparison and structure similarity searching

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Recognition of functional sites in protein structures.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Identification of protein biochemical functions by similarity search using the molecular surface database eF-site

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

A new bioinformatic approach to detect common 3D sites in protein structures.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

14 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

A searchable database for comparing protein-ligand binding sites for the analysis of structure-function relationships.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

Identification of protein functions from a molecular surface database, eF-site.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

A new method to detect related function among proteins independent of sequence and fold homology.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896174

26 November 2018

Identifiers

DOI

10.1093/NAR/GKQ400

1 reference

13 October 2017

journals/nar/RenXLB10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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13 October 2017

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PMCID

2896174