IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. (Q30373190)

1 October 2017

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. (English)

1 reference

1 October 2017

0 references

1

1 reference

1 October 2017

Bajuna R Salehe

3

0 references

Jennifer D Atkins

object named as

Jennifer D Atkins

series ordinal

2

0 references

Daniel Barry Roche

object named as

Daniel B Roche

series ordinal

5

0 references

Ahmad Nazrun Shuid

series ordinal

4

object named as

Ahmad N Shuid

1 reference

PMCID

4489238

1 October 2017

language of work or name

English

0 references

publication date

27 March 2015

1 reference

1 October 2017

Nucleic Acids Research

1 reference

1 October 2017

43

1 reference

1 October 2017

W169-73

1 reference

1 October 2017

W1

1 reference

Creative Commons Attribution 4.0 International

1 October 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of ligand binding site predictions in CASP10

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of template-based protein structure predictions in CASP10

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of protein disorder region predictions in CASP10

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of the assessment: evaluation of the model quality estimates in CASP10

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

The FunFOLD2 server for the prediction of protein-ligand interactions

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

The Protein Model Portal--a comprehensive resource for protein structure and model information

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

The ModFOLD4 server for the quality assessment of 3D protein models

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of template based protein structure predictions in CASP9.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Evaluation of model quality predictions in CASP9

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of ligand-binding residue predictions in CASP9.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Evaluation of disorder predictions in CASP9

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

The binding site distance test score: a robust method for the assessment of predicted protein binding sites.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

How significant is a protein structure similarity with TM-score = 0.5?

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

4 June 2018

The Protein Model Portal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Assessment of predictions submitted for the CASP7 domain prediction category.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

LOMETS: a local meta-threading-server for protein structure prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489238

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.

4 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV236

PDP: protein domain parser.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV236

Assessment of disorder predictions in CASP8

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV236

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25820431

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV236

1 reference

journals/nar/McGuffinASSR15

1 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 October 2017

1 reference

PMCID

4489238