PREDICT-2ND: a tool for generalized protein local structure prediction. (Q30371720)

19 August 2017

PREDICT-2ND: a tool for generalized protein local structure prediction. (English)

1 reference

protein structure prediction

19 August 2017

0 references

author name string

Sol Katzman

1

1 reference

19 August 2017

Christian Barrett

2

1 reference

19 August 2017

Grant Thiltgen

3

1 reference

19 August 2017

Rachel Karchin

4

1 reference

19 August 2017

Kevin Karplus

5

1 reference

19 August 2017

language of work or name

English

0 references

publication date

30 August 2008

1 reference

19 August 2017

1 reference

19 August 2017

24

1 reference

19 August 2017

2453-2459

1 reference

19 August 2017

21

1 reference

SAM-T04: what is new in protein-structure prediction for CASP6.

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Free modeling with Rosetta in CASP6

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Evaluation of local structure alphabets based on residue burial.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

PISCES: a protein sequence culling server

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Combining the GOR V algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Rosetta in CASP4: progress in ab initio protein structure prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

What is the value added by human intervention in protein structure prediction?

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Predicting protein structure using only sequence information.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Critical assessment of methods of protein structure prediction (CASP): round III.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Protein secondary structure prediction based on position-specific scoring matrices

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Predicting protein structure using hidden Markov models

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Critical assessment of methods of protein structure prediction (CASP): round II.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Knowledge-based protein secondary structure assignment

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Hidden Markov models for sequence analysis: extension and analysis of the basic method

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

PHD: predicting one-dimensional protein structure by profile-based neural networks

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Improved prediction of protein secondary structure by use of sequence profiles and neural networks

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Redefining the goals of protein secondary structure prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

Sequence logos: a new way to display consensus sequences

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

The Protein Data Bank: a computer-based archival file for macromolecular structures

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732275

4 June 2018

Support-vector networks

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN438

A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN438

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN438

Position-based sequence weights

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18757875

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using substitution probabilities to improve position-specific scoring matrices

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18757875

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN438

1 reference

journals/bioinformatics/KatzmanBTKK08

19 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

19 August 2017

1 reference