SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences. (Q30369218)

4 September 2017

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences. (English)

1 reference

4 September 2017

Lukasz Kurgan

1

0 references

author name string

Krzysztof Cios

series ordinal

2

1 reference

PMCID

2391167

4 September 2017

Ke Chen

series ordinal

3

1 reference

4 September 2017

1 May 2008

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4 September 2017

1 reference

4 September 2017

9

1 reference

4 September 2017

226

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Creative Commons Attribution 2.0 Generic

4 September 2017

start time

1 May 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-226

0 references

cites work

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Prediction of protein secondary structure content for the twilight zone sequences.

20 June 2018

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The protein structure prediction problem could be solved using the current PDB library

20 June 2018

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20 June 2018

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20 June 2018

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DPANN: improved sequence to structure alignments following fold recognition.

20 June 2018

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Prediction of protein structural classes by a new measure of information discrepancy.

20 June 2018

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20 June 2018

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Support vector machines for predicting protein structural class

20 June 2018

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Prediction of protein cellular attributes using pseudo-amino acid composition

20 June 2018

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Assessing the accuracy of prediction algorithms for classification: an overview

20 June 2018

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Protein secondary structure prediction based on position-specific scoring matrices

20 June 2018

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A model of the complex between cyclin-dependent kinase 5 and the activation domain of neuronal Cdk5 activator

20 June 2018

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Twilight zone of protein sequence alignments

20 June 2018

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An intriguing controversy over protein structural class prediction

20 June 2018

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Prediction of the helix/strand content of globular proteins based on their primary sequences.

20 June 2018

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Domain structural class prediction.

20 June 2018

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Prediction of the secondary structure contents of globular proteins based on three structural classes

20 June 2018

1 reference

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Prediction and classification of domain structural classes.

20 June 2018

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CATH--a hierarchic classification of protein domain structures

20 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

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Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Prediction of secondary structural content of proteins from their amino acid composition alone. I. New analytic vector decomposition methods

20 June 2018

1 reference

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Predicting protein folding types by distance functions that make allowances for amino acid interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Enlarged representative set of protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

SCOP: a structural classification of proteins database for the investigation of sequences and structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A sequence property approach to searching protein databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Prediction of protein structural classes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Identification of common molecular subsequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A simple method for displaying the hydropathic character of a protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

The hydrophobic moment detects periodicity in protein hydrophobicity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Database of homology-derived protein structures and the structural meaning of sequence alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Predicting protein secondary structure content. A tandem neural network approach.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Prediction of protein crystallization using collocation of amino acid pairs.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Using Bagging classifier to predict protein domain structural class.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Novel hybrid method for the evaluation of parameters contributing in determination of protein structural classes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A new representation for protein secondary structure prediction based on frequent patterns.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Classifier ensembles for protein structural class prediction with varying homology.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A comment on "Prediction of protein structural classes by a new measure of information discrepancy".

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Ensemble classifier for protein fold pattern recognition.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Using pseudo amino acid composition to predict protein structural classes: approached with complexity measure factor.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Highly accurate and consistent method for prediction of helix and strand content from primary protein sequences.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Using LogitBoost classifier to predict protein structural classes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Using supervised fuzzy clustering to predict protein structural classes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Boosting classifier for predicting protein domain structural class.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5'-phosphate-dependent enzymes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A simple and fast secondary structure prediction method using hidden neural networks.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Support vector machines for prediction of protein domain structural class.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Accurate prediction of protein secondary structural content.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

New method for accurate prediction of solvent accessibility from protein sequence.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Prediction of protein structural classes by neural network.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

How good is prediction of protein structural class by the component-coupled method?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

Prediction of protein (domain) structural classes based on amino-acid index.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2391167

A new approach to predict the helix/strand content of globular proteins

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18452616

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-226

1 reference

journals/bmcbi/KurganCC08

4 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 September 2017

1 reference

PMCID

2391167