PPT-DB: the protein property prediction and testing database. (Q30364988)

14 August 2017

PPT-DB: the protein property prediction and testing database. (English)

1 reference

14 August 2017

David S Wishart

1

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author name string

David Arndt

2

1 reference

14 August 2017

Mark Berjanskii

3

1 reference

14 August 2017

An Chi Guo

4

1 reference

14 August 2017

Yi Shi

5

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14 August 2017

Savita Shrivastava

6

1 reference

14 August 2017

Jianjun Zhou

7

1 reference

14 August 2017

You Zhou

8

1 reference

14 August 2017

Guohui Lin

9

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14 August 2017

language of work or name

English

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publication date

4 October 2007

1 reference

14 August 2017

Nucleic Acids Research

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14 August 2017

36

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14 August 2017

Database issue

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14 August 2017

D222-9

1 reference

Prediction of Protein Structure and the Principles of Protein Conformation. Gerald D. Fasman, Ed. Plenum, New York, 1989. xiv, 798 pp., illus. $95.

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

PREDITOR: a web server for predicting protein torsion angle restraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Improving the accuracy of protein secondary structure prediction using structural alignment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

SPdb--a signal peptide database.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Protein flexibility and rigidity predicted from sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

SCRATCH: a protein structure and structural feature prediction server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Improved method for predicting beta-turn using support vector machine

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Improved prediction of signal peptides: SignalP 3.0

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

SuperPose: a simple server for sophisticated structural superposition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Beta edge strands in protein structure prediction and aggregation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

PISCES: a protein sequence culling server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Static benchmarking of membrane helix predictions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

VADAR: a web server for quantitative evaluation of protein structure quality

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

EVA: large-scale analysis of secondary structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Contact order, transition state placement and the refolding rates of single domain proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Automated 1H and 13C chemical shift prediction using the BioMagResBank

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

The influence of amino-acid sequence on protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Analysis and prediction of the different types of beta-turn in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Areas, volumes, packing and protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Paircoil2: improved prediction of coiled coils from sequence.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238980

Contact model for the prediction of NMR N-H order parameters in globular proteins

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17916570

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM800

1 reference

journals/nar/WishartABGSSZZL08

14 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 August 2017

1 reference