Fold assessment for comparative protein structure modeling. (Q30364880)

12 November 2017

Fold assessment for comparative protein structure modeling. (English)

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12 November 2017

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2

Andrej Sali

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Francisco Melo

object named as

Francisco Melo

series ordinal

1

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publication date

28 September 2007

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12 November 2017

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12 November 2017

16

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12 November 2017

2412-2426

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12 November 2017

11

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PMCID

2211691

describes a project that uses

12 November 2017

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/2211691

inferred from PubMed Central ID database lookup

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3 June 2018

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Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Ab initio construction of protein tertiary structures using a hierarchical approach

3 June 2018

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3 June 2018

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3 June 2018

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GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

3 June 2018

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Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

3 June 2018

1 reference

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Assessing protein structures with a non-local atomic interaction energy.

3 June 2018

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An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

3 June 2018

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3 June 2018

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Contact area difference (CAD): a robust measure to evaluate accuracy of protein models

3 June 2018

1 reference

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Occluded molecular surface: analysis of protein packing.

3 June 2018

1 reference

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Deviations from standard atomic volumes as a quality measure for protein crystal structures

3 June 2018

1 reference

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Energy functions that discriminate X-ray and near native folds from well-constructed decoys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Protein structure comparison by alignment of distance matrices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Comparative protein modelling by satisfaction of spatial restraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Recognition of errors in three-dimensional structures of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

The FSSP database of structurally aligned protein fold families

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

The relation between the divergence of sequence and structure in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Measuring the accuracy of diagnostic systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

ROC methodology in radiologic imaging

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Protein folding. Effect of packing density on chain conformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

A new approach to protein fold recognition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Assessment of protein models with three-dimensional profiles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Improvement of the GenTHREADER method for genomic fold recognition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Statistical comparison of two ROC-curve estimates obtained from partially-paired datasets.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Novel knowledge-based mean force potential at atomic level

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Statistical potentials extracted from protein structures: how accurate are they?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211691

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

26 November 2018

1 reference

12 December 2020

Globin fold in a bacterial toxin

1 reference

12 December 2020

1 reference

12 December 2020

Evaluation of atomic level mean force potentials via inverse folding and inverse refinement of protein structures: atomic burial position and pairwise non-bonded interactions

1 reference

12 December 2020

De Novo Prediction of Three-dimensional Structures for Major Protein Families

1 reference

12 December 2020

The evolution of protein structures

1 reference

12 December 2020

Structural genomics: keystone for a Human Proteome Project

1 reference

12 December 2020

Protein modelling for all

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.072895107

1 reference

12 November 2017

1 reference

12 November 2017

1 reference

PMCID

2211691