CUPSAT: prediction of protein stability upon point mutations. (Q30355535)

15 October 2017

CUPSAT: prediction of protein stability upon point mutations. (English)

1 reference

15 October 2017

Dietmar Schomburg

3

0 references

M Michael Gromiha

series ordinal

2

object named as

M Michael Gromiha

1 reference

15 October 2017

Vijaya Parthiban

1

1 reference

PMCID

1538884

15 October 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

15 October 2017

Nucleic Acids Research

1 reference

15 October 2017

34

1 reference

15 October 2017

Web Server issue

1 reference

15 October 2017

W239-42

1 reference

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

15 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

PISCES: a protein sequence culling server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

ProTherm: Thermodynamic Database for Proteins and Mutants.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Sequence analysis of temperature-sensitive mutations in the Saccharomyces cerevisiae gene CDC28.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Prediction of protein stability changes for single-site mutations using support vector machines

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

A neural-network-based method for predicting protein stability changes upon single point mutations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Novel knowledge-based mean force potential at atomic level

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538884

Average assignment method for predicting the stability of protein mutants

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16845001

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of structural and sequence information in the prediction of protein stability changes: comparison between buried and partially buried mutations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16845001

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL190

1 reference

journals/nar/ParthibanGS06

15 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

15 October 2017

1 reference

PMCID

1538884