Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization. (Q30330310)

18 June 2017

Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization. (English)

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18 June 2017

Johan Desmet

1

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18 June 2017

Jan Spriet

series ordinal

2

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18 June 2017

Ignace Lasters

series ordinal

3

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18 June 2017

language of work or name

English

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publication date

1 July 2002

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18 June 2017

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18 June 2017

48

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18 June 2017

31-43

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18 June 2017

1

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Modeling side-chain conformation

18 June 2017

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Efficient rotamer elimination applied to protein side-chains and related spin glasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Computer search algorithms in protein modification and design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

De novo protein design: fully automated sequence selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Automatic protein design with all atom force-fields by exact and heuristic optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Optimal sequence selection in proteins of known structure by simulated evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

A new approach to the rapid determination of protein side chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Genetic algorithms for protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Predicting protein mutant energetics by self-consistent ensemble optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Extending the accuracy limits of prediction for side-chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Energy functions for protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Branch-and-terminate: a combinatorial optimization algorithm for protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Effective energy functions for protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

A method to configure protein side-chains from the main-chain trace in homology modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Determinants of side chain conformational preferences in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

Protein sidechain conformer prediction: a test of the energy function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10131

21 January 2018

Identifiers

DOI

10.1002/PROT.10131

1 reference

18 June 2017

1 reference