Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics. (Q30327881)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11206052%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

title

Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics (English)

1 reference

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4 November 2019

0 references

1 reference

4

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4 November 2019

author name string

Kuroda Y

series ordinal

1

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4 November 2019

Tani K

series ordinal

2

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4 November 2019

Matsuo Y

series ordinal

3

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4 November 2019

publication date

1 December 2000

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4 November 2019

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4 November 2019

volume

9

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4 November 2019

issue

12

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4 November 2019

page(s)

2313-2321

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Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing

4 November 2019

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3 June 2018

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3 June 2018

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Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair

3 June 2018

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Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus

3 June 2018

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Structural genomics: beyond the human genome project

3 June 2018

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From protein structure to function.

3 June 2018

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Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus

3 June 2018

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Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1)

3 June 2018

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SCOP: a Structural Classification of Proteins database.

3 June 2018

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The PRESAGE database for structural genomics

3 June 2018

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TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins

3 June 2018

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3 June 2018

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The second decade--into the third millenium

3 June 2018

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Structural genomics: bioinformatics in the driver's seat

3 June 2018

1 reference

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The structural aspects of limited proteolysis of native proteins

3 June 2018

1 reference

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The ProDom database of protein domain families

3 June 2018

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Touring protein fold space with Dali/FSSP

3 June 2018

1 reference

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NMR structures of proteins and protein complexes beyond 20,000 M(r).

3 June 2018

1 reference

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CATH--a hierarchic classification of protein domain structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Pfam: a comprehensive database of protein domain families based on seed alignments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Solution structure of the link module: a hyaluronan-binding domain involved in extracellular matrix stability and cell migration

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

The SWISS-PROT protein sequence data bank and its new supplement TREMBL

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Modular arrangement of proteins as inferred from analysis of homology.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Protein superfamilies and domain superfolds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Building protein structure and function from modular units

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

SCOP: a structural classification of proteins database for the investigation of sequences and structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Solution structure of the SH3 domain of phospholipase C-gamma

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

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Basic local alignment search tool

3 June 2018

1 reference

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Structure of the fibronectin type 1 module

3 June 2018

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Solution structure of the SH3 domain of Src and identification of its ligand-binding site

3 June 2018

1 reference

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3 June 2018

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A comparison of sequence and structure protein domain families as a basis for structural genomics.

26 November 2018

1 reference

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Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations.

26 November 2018

1 reference

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Shining a light on structural genomics.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144534

The Argonne Structural Genomics Workshop: Lamaze class for the birth of a new science

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11206052

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.9.12.2313

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11206052%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11206052%20AND%20SRC:MED&resulttype=core&format=json

4 November 2019

PubMed publication ID

11206052

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11206052%20AND%20SRC:MED&resulttype=core&format=json