Free energy determinants of tertiary structure and the evaluation of protein models. (Q30327755)

8 November 2017

Free energy determinants of tertiary structure and the evaluation of protein models. (English)

1 reference

8 November 2017

D Petrey

1

1 reference

8 November 2017

B Honig

series ordinal

2

1 reference

8 November 2017

language of work or name

1 reference

1 November 2000

1 reference

8 November 2017

1 reference

8 November 2017

9

1 reference

8 November 2017

2181-2191

1 reference

8 November 2017

11

1 reference

Effective energy functions for protein structure prediction.

8 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Increasing protein stability by altering long-range coulombic interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Optimization of the electrostatic interactions between ionized groups and peptide dipoles in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Empirical scale of side-chain conformational entropy in protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Comparative protein modelling by satisfaction of spatial restraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Optimization of the electrostatic interactions in proteins of different functional and folding type

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Free energy determinants of secondary structure formation: I. alpha-Helices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

An analysis of incorrectly folded protein models. Implications for structure predictions.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Solvation energy in protein folding and binding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Evaluation of protein models by atomic solvation preference.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144503

Nature of the charge distribution in proteins

3 June 2018

1 reference

12 December 2020

Recognizing native folds by the arrangement of hydrophobic and polar residues

1 reference

12 December 2020

A critical assessment of comparative molecular modeling of tertiary structures of proteins

1 reference

12 December 2020

Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding

1 reference

12 December 2020

Local electrostatic optimization in proteins

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.9.11.2181

1 reference

release_a43kgfgh2ja3ll4z6zjmqqngyq

8 November 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/a43kgfgh2ja3ll4z6zjmqqngyq

24 November 2022

mapped directly with Wikidata item

1 reference

8 November 2017

1 reference