Interfacial water molecules in SH3 interactions: a revised paradigm for polyproline recognition. (Q30010200)

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17 January 2020

title

Interfacial water molecules in SH3 interactions: a revised paradigm for polyproline recognition (English)

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17 January 2020

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1

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17 January 2020

Javier Ruiz Sanz

2

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17 January 2020

Irene Luque

3

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17 January 2020

author name string

Jose M Martin-Garcia

1

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21 May 2017

Javier Ruiz-Sanz

2

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21 May 2017

language of work or name

English

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publication date

1 March 2012

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17 January 2020

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17 January 2020

volume

442

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17 January 2020

issue

2

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17 January 2020

page(s)

443-451

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Role of Interfacial Water Molecules in Proline-rich Ligand Recognition by the Src Homology 3 Domain of Abl

17 January 2020

cites work

1 reference

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Compensating enthalpic and entropic changes hinder binding affinity optimization

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RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef

22 May 2017

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Crystallographic and calorimetric analysis of peptide binding to OppA protein

22 May 2017

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Crystallographic and Functional Analysis of the ESCRT-I /HIV-1 Gag PTAP Interaction

22 May 2017

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Structural basis for polyproline recognition by the FE65 WW domain

22 May 2017

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NMR structural studies of the ItchWW3 domain reveal that phosphorylation at T30 inhibits the interaction with PPxY-containing ligands

22 May 2017

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Conserved beta-hairpin recognition by the GYF domains of Smy2 and GIGYF2 in mRNA surveillance and vesicular transport complexes

22 May 2017

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Hydration structure of a collagen peptide

22 May 2017

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Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent

22 May 2017

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Structural Basis for High-Affinity Peptide Inhibition of Human Pin1

22 May 2017

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Structure-function-folding relationship in a WW domain

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Structural basis for phosphoserine-proline recognition by group IV WW domains

22 May 2017

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Structure of a WW domain containing fragment of dystrophin in complex with beta-dystroglycan

22 May 2017

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The SH3 domain--a family of versatile peptide- and protein-recognition module

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Potential disease targets for drugs that disrupt protein-- protein interactions of Grb2 and Crk family adaptors

21 January 2018

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Normalization of nomenclature for peptide motifs as ligands of modular protein domains

21 January 2018

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Recognition of proline-rich motifs by protein-protein-interaction domains

21 January 2018

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Energetics of Src homology domain interactions in receptor tyrosine kinase-mediated signaling

21 January 2018

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The role of backbone motions in ligand binding to the c-Src SH3 domain

21 January 2018

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Exploring the impact of polyproline II (PII) conformational bias on the binding of peptides to the SEM-5 SH3 domain

21 January 2018

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Thermodynamics of binding to SH3 domains: the energetic impact of polyproline II (PII) helix formation

21 January 2018

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Thermodynamic dissection of the binding energetics of proline-rich peptides to the Abl-SH3 domain: implications for rational ligand design

21 January 2018

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Structural parameterization of the binding enthalpy of small ligands

21 January 2018

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Classification of water molecules in protein binding sites.

21 January 2018

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WaterScore: a novel method for distinguishing between bound and displaceable water molecules in the crystal structure of the binding site of protein-ligand complexes.

21 January 2018

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The native state conformational ensemble of the SH3 domain from alpha-spectrin

21 January 2018

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Conserved water molecules in MHC class-I molecules and their putative structural and functional roles

21 January 2018

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Conserved water molecules stabilize the Omega-loop in class A beta-lactamases

21 January 2018

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Multiple molecular dynamics simulations of TEM beta-lactamase: dynamics and water binding of the omega-loop

21 January 2018

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Rational design of specific high-affinity peptide ligands for the Abl-SH3 domain

21 January 2018

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Specificity and interactions of the protein OppA: partitioning solvent binding effects using mass spectrometry 1 1Edited by P. E. Wright

21 January 2018

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The structure of the Candida albicans Ess1 prolyl isomerase reveals a well-ordered linker that restricts domain mobility

21 January 2018

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Hydration dynamics of the collagen triple helix by NMR.

21 January 2018

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Structure of human TSG101 UEV domain

21 January 2018

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21 January 2018

Identifiers

DOI

10.1042/BJ20111089

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22115123%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference