ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data (Q30000291)

7

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author name string

Ke-Ren Zhou

1

0 references

Shun Liu

2

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Wen-Ju Sun

3

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Ling-Ling Zheng

4

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Jian-Hua Yang

Creative Commons Attribution-NonCommercial 4.0 International

6

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language of work or name

English

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publication date

4 January 2017

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published in

Nucleic Acids Research

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volume

45

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issue

D1

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page(s)

D43-D50

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copyright license

start time

4 January 2017

1 reference

April 2022 Public Data File from Crossref

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

miRBase: annotating high confidence microRNAs using deep sequencing data

21 May 2017

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21 May 2017

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Enhancers: five essential questions

21 May 2017

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DNA-binding specificities of human transcription factors

21 May 2017

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21 May 2017

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lincRNAs act in the circuitry controlling pluripotency and differentiation

21 May 2017

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

21 May 2017

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21 May 2017

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21 May 2017

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The widespread regulation of microRNA biogenesis, function and decay

21 May 2017

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 May 2017

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GREAT improves functional interpretation of cis-regulatory regions

21 May 2017

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21 May 2017

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ChIP-seq: advantages and challenges of a maturing technology

21 May 2017

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Insights from genomic profiling of transcription factors

21 May 2017

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21 May 2017

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 May 2017

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Evolution and functions of long noncoding RNAs

21 May 2017

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ChIP-seq accurately predicts tissue-specific activity of enhancers

21 May 2017

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MicroRNAs: target recognition and regulatory functions

21 May 2017

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Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

21 May 2017

1 reference

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Combinatorial patterns of histone acetylations and methylations in the human genome

21 May 2017

1 reference

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Specific expression of long noncoding RNAs in the mouse brain

21 May 2017

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The landscape of histone modifications across 1% of the human genome in five human cell lines

21 May 2017

1 reference

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Transcriptional Regulatory Elements in the Human Genome

21 May 2017

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

21 May 2017

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21 May 2017

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The expanding snoRNA world

21 January 2018

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The UCSC Genome Browser database: 2016 update

21 May 2017

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deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

3 June 2018

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C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion

3 June 2018

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Long non-coding RNAs: new players in cell differentiation and development

3 June 2018

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ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma

3 June 2018

1 reference

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Sequence and chromatin determinants of cell-type-specific transcription factor binding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

Transcription factors: from enhancer binding to developmental control

3 June 2018

1 reference

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Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210649

YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas

3 June 2018

1 reference

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Colon cancer associated transcript-1: a novel RNA expressed in malignant and pre-malignant human tissues.

3 June 2018

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A cis-regulatory map of the Drosophila genome.

3 June 2018

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CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.

3 June 2018

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TransmiR: a transcription factor-microRNA regulation database

3 June 2018

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Inducible expression of microRNA-194 is regulated by HNF-1alpha during intestinal epithelial cell differentiation

3 June 2018

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TATA-binding protein-independent initiation: YY1, TFIIB, and RNA polymerase II direct basal transcription on supercoiled template DNA.

3 June 2018

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YY1 is an initiator sequence-binding protein that directs and activates transcription in vitro

3 June 2018

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A user's guide to the encyclopedia of DNA elements (ENCODE)

3 June 2018

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Global histone modification patterns predict risk of prostate cancer recurrence

21 January 2018

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The Genotype-Tissue Expression (GTEx) project

21 January 2018

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Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.

21 January 2018

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Transforming growth factor β1 represses proximal tubular cell microRNA-192 expression through decreased hepatocyte nuclear factor DNA binding

21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/27924033

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW965

0 references

DBLP publication ID

journals/nar/ZhouLSZZYQ17

1 reference