Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology (Q29617583)

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8 February 2020

title

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology (English)

2 references

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30 April 2017

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8 February 2020

1 reference

1 reference

2

1 reference

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8 February 2020

Simon Frost

series ordinal

3

1 reference

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Sergei L. Kosakovsky Pond

8 February 2020

series ordinal

4

object named as

Sergei L Kosakovsky Pond

1 reference

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8 February 2020

author name string

Wayne Delport

series ordinal

1

1 reference

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8 February 2020

language of work or name

1 reference

30 April 2017

publication date

29 July 2010

1 reference

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8 February 2020

2 references

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30 April 2017

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8 February 2020

volume

26

2 references

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30 April 2017

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8 February 2020

page(s)

2455-2457

1 reference

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8 February 2020

issue

19

2 references

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30 April 2017

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An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1

8 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Not so different after all: a comparison of methods for detecting amino acid sites under selection

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Bayes empirical bayes inference of amino acid sites under positive selection

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

ProtTest: selection of best-fit models of protein evolution

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

HyPhy: hypothesis testing using phylogenies

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

A fast algorithm for joint reconstruction of ancestral amino acid sequences

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

A new method of inference of ancestral nucleotide and amino acid sequences

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

CodonTest: modeling amino acid substitution preferences in coding sequences

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Evolutionary fingerprinting of genes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Frequent toggling between alternative amino acids is driven by selection in HIV-1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Robust inference of positive selection from recombining coding sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Adaptation to different human populations by HIV-1 revealed by codon-based analyses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

GARD: a genetic algorithm for recombination detection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Automated phylogenetic detection of recombination using a genetic algorithm.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

A genetic algorithm approach to detecting lineage-specific variation in selection pressure.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2944195

Mapping mutations on phylogenies

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20671151

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTQ429

3 references

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30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20671151%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/DelportPFP10

8 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20671151

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20671151%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20671151

30 April 2017