Rooting human parechovirus evolution in time (Q28752011)

5

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Nuno Rodrigues Faria

object named as

Nuno R Faria

1

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Kimberley S M Benschop

1 reference

ORCID Public Data File 2021

author name string

Michel de Vries

2

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Formijn J van Hemert

3

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Kimberley Benschop

Calibration of multiple poliovirus molecular clocks covering an extended evolutionary range

4

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language of work or name

English

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publication date

15 July 2009

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published in

BMC Evolutionary Biology

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volume

9

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issue

1

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page(s)

164

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cites work

1 reference

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16 March 2017

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Analysis of a new human parechovirus allows the definition of parechovirus types and the identification of RNA structural domains

16 March 2017

1 reference

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Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses

16 March 2017

1 reference

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Relaxed phylogenetics and dating with confidence

16 March 2017

1 reference

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Molecular Clocks and the Puzzle of RNA Virus Origins

16 March 2017

1 reference

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Mutation rates among RNA viruses

16 March 2017

1 reference

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A new picornavirus isolated from bank voles (Clethrionomys glareolus)

16 March 2017

1 reference

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Basic concepts in RNA virus evolution

16 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

16 March 2017

1 reference

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A Phylogenetic Method for Detecting Positive Epistasis in Gene Sequences and Its Application to RNA Virus Evolution

16 March 2017

1 reference

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Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

23 March 2017

1 reference

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Bayes empirical bayes inference of amino acid sites under positive selection

7 April 2017

1 reference

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Rates of evolutionary change in viruses: patterns and determinants

7 April 2017

1 reference

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Bayesian selection of continuous-time Markov chain evolutionary models

7 April 2017

1 reference

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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

7 April 2017

1 reference

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Unifying the epidemiological and evolutionary dynamics of pathogens

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Novel human parechovirus from Brazil

7 April 2017

1 reference

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Genomic characterization of novel human parechovirus type

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

High prevalence of human Parechovirus (HPeV) genotypes in the Amsterdam region and identification of specific HPeV variants by direct genotyping of stool samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Evolutionary history and phylogeography of human viruses

3 June 2018

1 reference

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Longitudinal observation of parechovirus in stool samples from Norwegian infants

3 June 2018

1 reference

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Outbreak of Puumala virus infection, Sweden

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus cultures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Prevalence, types, and RNA concentrations of human parechoviruses, including a sixth parechovirus type, in stool samples from patients with acute enteritis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Bayesian coalescent inference of hepatitis A virus populations: evolutionary rates and patterns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Isolation and characterization of novel human parechovirus from clinical samples

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Fourth human parechovirus serotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechovirus types 1, 2 and 3 infections in Canada

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechovirus 3 and neonatal infections

3 June 2018

1 reference

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The population genetics and evolutionary epidemiology of RNA viruses

3 June 2018

1 reference

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The phylogeography of human viruses

3 June 2018

1 reference

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Isolation and identification of a novel human parechovirus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Inference of viral evolutionary rates from molecular sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Puumala hantavirus infection in humans and in the reservoir host, Ardennes region, France.

3 June 2018

1 reference

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Molecular analysis of three Ljungan virus isolates reveals a new, close-to-root lineage of the Picornaviridae with a cluster of two unrelated 2A proteins

3 June 2018

1 reference

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Molecular evolution of Puumala hantavirus

3 June 2018

1 reference

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Entry of human parechovirus 1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Evolution of circulating wild poliovirus and of vaccine-derived poliovirus in an immunodeficient patient: a unifying model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Comparison of classic and molecular approaches for the identification of untypeable enteroviruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechoviruses--biology and clinical significance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Codon substitution in evolution and the "saturation" of synonymous changes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Enteroviruses in human disease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechoviruses as an important viral cause of sepsislike illness and meningitis in young children

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Hantavirus outbreak, Germany, 2007.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Widespread recombination within human parechoviruses: analysis of temporal dynamics and constraints

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Human parechovirus infections in Dutch children and the association between serotype and disease severity

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Genetic diversity in the VP1 gene of foot-and-mouth disease virus serotype Asia 1.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2723090

Sensitivity of the relative-rate test to taxonomic sampling

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19604368

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Properties of ECHO types 22, 23 and 24 viruses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19604368

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A method for detecting positive selection at single amino acid sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19604368