Effect of the transposable element environment of human genes on gene length and expression (Q28741429)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362639%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

Effect of the transposable element environment of human genes on gene length and expression (English)

1 reference

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24 January 2020

author

Leonardo Mariño-Ramírez

4

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24 January 2020

author name string

Daudi Jjingo

1

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24 January 2020

Ahsan Huda

2

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24 January 2020

Madhumati Gundapuneni

3

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24 January 2020

I King Jordan

5

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24 January 2020

language of work or name

English

0 references

publication date

28 February 2011

1 reference

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Genome Biology and Evolution

24 January 2020

published in

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24 January 2020

volume

3

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24 January 2020

issue

0

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page(s)

259-271

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Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

24 January 2020

cites work

1 reference

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Gametophytic selection in Arabidopsis thaliana supports the selective model of intron length reduction

17 March 2017

1 reference

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17 March 2017

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17 March 2017

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17 March 2017

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Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era

17 March 2017

1 reference

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17 March 2017

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Interspersed repeats and other mementos of transposable elements in mammalian genomes

7 April 2017

1 reference

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Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

7 April 2017

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7 April 2017

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A universal nonmonotonic relationship between gene compactness and expression levels in multicellular eukaryotes

7 April 2017

1 reference

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A c-Myc regulatory subnetwork from human transposable element sequences.

3 June 2018

1 reference

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The effect of transposable element insertions on gene expression evolution in rodents

3 June 2018

1 reference

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Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

3 June 2018

1 reference

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Selection for the miniaturization of highly expressed genes

3 June 2018

1 reference

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Origin and evolution of human microRNAs from transposable elements.

3 June 2018

1 reference

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Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Repetitive sequence environment distinguishes housekeeping genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Transposable element derived DNaseI-hypersensitive sites in the human genome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Evolutionary significance of gene expression divergence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Alu and L1 retroelements are correlated with the tissue extent and peak rate of gene expression, respectively

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Compactness of human housekeeping genes: selection for economy or genomic design?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

The signature of selection mediated by expression on human genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Human housekeeping genes are compact

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Retroelement distributions in the human genome: variations associated with age and proximity to genes

3 June 2018

1 reference

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Selection for short introns in highly expressed genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Human cis natural antisense transcripts initiated by transposable elements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Transposon-free regions in mammalian genomes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3070429

Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21362639

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dualism of gene GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21362639

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Human antisense genes have unusually short introns: evidence for selection for rapid transcription

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21362639

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVR015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362639%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21362639%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference