Reactivation of L1 retrotransposon by benzo(a)pyrene involves complex genetic and epigenetic regulation (Q28740315)

2

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James L Quertermous

3

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Mary E Lacy

4

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Kenneth S Ramos

Germ-line mutations, DNA damage, and global hypermethylation in mice exposed to particulate air pollution in an urban/industrial location

5

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language of work or name

English

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publication date

March 2011

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published in

Epigenetics

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volume

6

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issue

3

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page(s)

355-67

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cites work

1 reference

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5-Aza-deoxycytidine induces selective degradation of DNA methyltransferase 1 by a proteasomal pathway that requires the KEN box, bromo-adjacent homology domain, and nuclear localization signal

17 March 2017

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Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

17 March 2017

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An important role for RUNX3 in human L1 transcription and retrotransposition

17 March 2017

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Hot L1s account for the bulk of retrotransposition in the human population

17 March 2017

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DNMT1 forms a complex with Rb, E2F1 and HDAC1 and represses transcription from E2F-responsive promoters

17 March 2017

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Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

17 March 2017

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Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element

17 March 2017

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Histone acetyltransferases

17 March 2017

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Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark

7 April 2017

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The history of cancer epigenetics

7 April 2017

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MethPrimer: designing primers for methylation PCRs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

The DNA methyltransferases of mammals

7 April 2017

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High frequency retrotransposition in cultured mammalian cells

7 April 2017

1 reference

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Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins.

7 April 2017

1 reference

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Histone deacetylase 2 is phosphorylated, ubiquitinated, and degraded by cigarette smoke

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Stage-specific alterations of DNA methyltransferase expression, DNA hypermethylation, and DNA hypomethylation during prostate cancer progression in the transgenic adenocarcinoma of mouse prostate model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Inhibition of histone deacetylases promotes ubiquitin-dependent proteasomal degradation of DNA methyltransferase 1 in human breast cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Genome wide transcriptional profiling in breast cancer cells reveals distinct changes in hormone receptor target genes and chromatin modifying enzymes after proteasome inhibition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Mitogen- and stress-activated kinase 1-mediated histone H3 phosphorylation is crucial for cell transformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Arsenite alters global histone H3 methylation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Intersection of nuclear receptors and the proteasome on the epigenetic landscape

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Genome-wide H3K9 histone acetylation profiles are altered in benzopyrene-treated MCF7 breast cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Context-specific regulation of LINE-1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Carcinogen-induced histone alteration in normal human mammary epithelial cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Histone citrullination by protein arginine deiminase: is arginine methylation a green light or a roadblock?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Ligand-dependent and -independent degradation of the human aryl hydrocarbon receptor (hAHR) in cell culture models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Transcriptome profiling of human hepatocytes treated with Aroclor 1254 reveals transcription factor regulatory networks and clusters of regulated genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Benzopyrene exposure disrupts DNA methylation and growth dynamics in breast cancer cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Fitness cost of LINE-1 (L1) activity in humans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Activation of human long interspersed nuclear element 1 retrotransposition by benzo(a)pyrene, an ubiquitous environmental carcinogen

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Transposon silencing and imprint establishment in mammalian germ cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Chromatin inactivation precedes de novo DNA methylation during the progressive epigenetic silencing of the RASSF1A promoter

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

A YY1-binding site is required for accurate human LINE-1 transcription initiation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Transcriptional regulation of the human LINE-1 retrotransposon L1.2B.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Redox Regulation of a Novel L1Md-A2 Retrotransposon in Vascular Smooth Muscle Cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Genotoxic methylating agents modulate extracellular signal regulated kinase activity through MEK-dependent, glutathione-, and DNA methylation-independent mechanisms in lung epithelial cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

The mechanism of AH receptor protein down-regulation (degradation) and its impact on AH receptor-mediated gene regulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

5-Azacytidine and 5-aza-2'-deoxycytidine as inhibitors of DNA methylation: mechanistic studies and their implications for cancer therapy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Metastable epialleles in mammals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Dynamic reprogramming of DNA methylation in the early mouse embryo.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Epigenetic lesions causing genetic lesions in human cancer: promoter hypermethylation of DNA repair genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

DNA methylation, heterochromatin and epigenetic carcinogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Analysis of chromatin structure by in vivo formaldehyde cross-linking.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Base sequence-dependent bends in site-specific benzo[a]pyrene diol epoxide-modified oligonucleotide duplexes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Interference of benzo[a]pyrene diol epoxide-deoxyguanosine adducts in a GC box with binding of the transcription factor Sp1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Retinoblastoma protein reverses DNA bending by transcription factor E2F.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Methylation patterns of long interspersed repeated DNA and alphoid repetitive DNA from human cell lines and tumors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Active LINE-1 retrotransposons in human testicular cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

DNA methylation and targeting of LINE retrotransposons in Entamoeba histolytica and Entamoeba invadens.

3 June 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

21 January 2018

Epigenetic crosstalk.

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Increased citrullination of histone H3 in multiple sclerosis brain and animal models of demyelination: a role for tumor necrosis factor-induced peptidylarginine deiminase 4 translocation.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation

21 January 2018

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https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

DNA demethylation induced by the methyl-CpG-binding domain protein MBD3.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Tandem repeat mutation, global DNA methylation, and regulation of DNA methyltransferases in cultured mouse embryonic fibroblast cells chronically exposed to chemicals with different modes of action

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Global and gene-specific promoter methylation changes are related to anti-B[a]PDE-DNA adduct levels and influence micronuclei levels in polycyclic aromatic hydrocarbon-exposed individuals.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Changes in DNA Methylation Patterns in Subjects Exposed to Low-Dose Benzene

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Validation of a mathematical model of gene transcription in aggregated cellular systems: application to l1 retrotransposition.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Ligand-dependent and independent modulation of aryl hydrocarbon receptor localization, degradation, and gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Neomorphic agouti mutations in obese yellow mice

21 January 2018

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https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

Regulation of chromatin and chromosome morphology by histone H3 modifications in pig oocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.4161%2FEPI.6.3.14282

The ORF1 protein encoded by LINE-1: structure and function during L1 retrotransposition

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3092684

Genome-wide hypomethylation in hepatocellular carcinogenesis.

27 November 2018

1 reference

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Identification of critical CpG sites for repression of L1 transcription by DNA methylation

27 November 2018

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12 December 2020

High-affinity binding of the cell cycle-regulated transcription factors E2F1 and E2F4 to benzo[a]pyrene diol epoxide-DNA adducts

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12 December 2020

Identification of genes differentially expressed in vascular smooth muscle cells following benzo[a]pyrene challenge: implications for chemical atherogenesis

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12 December 2020

Benzo(a)pyrene activates L1Md retrotransposon and inhibits DNA repair in vascular smooth muscle cells

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12 December 2020

Histone shuttling by poly(ADP-ribosylation)

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12 December 2020

The constant variation: DNA methylation changes during preimplantation development

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12 December 2020

High frequency of alterations in DNA methylation in adenocarcinoma of the prostate

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12 December 2020

Cytosine methylation in a CpG sequence leads to enhanced reactivity with Benzo[a]pyrene diol epoxide that correlates with a conformational change

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12 December 2020