Genome-wide analysis of syntenic gene deletion in the grasses (Q28730772)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22275519%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Genome-wide analysis of syntenic gene deletion in the grasses (English)

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21 January 2020

1

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21 January 2020

3

Eric Lyons

1 reference

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21 January 2020

2

Michael Freeling

1 reference

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21 January 2020

language of work or name

English

0 references

publication date

23 January 2012

1 reference

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Genome Biology and Evolution

21 January 2020

published in

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21 January 2020

volume

4

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21 January 2020

issue

3

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21 January 2020

page(s)

265-277

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Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

21 January 2020

cites work

1 reference

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Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners

17 March 2017

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Genome sequencing and analysis of the model grass Brachypodium distachyon

17 March 2017

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

17 March 2017

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Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

17 March 2017

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The Sorghum bicolor genome and the diversification of grasses

17 March 2017

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Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years

17 March 2017

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17 March 2017

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17 March 2017

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

17 March 2017

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Dinosaur coprolites and the early evolution of grasses and grazers

17 March 2017

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Two rounds of whole genome duplication in the ancestral vertebrate

17 March 2017

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The Genomes of Oryza sativa: a history of duplications

17 March 2017

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

17 March 2017

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

17 March 2017

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17 March 2017

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

7 April 2017

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Polyploidy and angiosperm diversification

7 April 2017

1 reference

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The evolutionary significance of ancient genome duplications

7 April 2017

1 reference

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Dose-sensitivity, conserved non-coding sequences, and duplicate gene retention through multiple tetraploidies in the grasses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Screening synteny blocks in pairwise genome comparisons through integer programming

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize

3 June 2018

1 reference

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SyMAP v3.4: a turnkey synteny system with application to plant genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genome-wide patterns of genetic variation among elite maize inbred lines

3 June 2018

1 reference

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Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

The collapse of gene complement following whole genome duplication

3 June 2018

1 reference

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Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

3 June 2018

1 reference

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Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

3 June 2018

1 reference

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Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

3 June 2018

1 reference

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

3 June 2018

1 reference

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The role of hybridization in plant speciation

3 June 2018

1 reference

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Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Insights into corn genes derived from large-scale cDNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

The TIGR Rice Genome Annotation Resource: improvements and new features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genome duplication and the origin of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Close split of sorghum and maize genome progenitors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genomic duplication, fractionation and the origin of regulatory novelty

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Understanding mechanisms of novel gene expression in polyploids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3318446

The Origin of Interspecific Genomic Incompatibility via Gene Duplication

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22275519

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVS009

2 references

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21 January 2020

1 reference

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21 January 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22275519%20AND%20SRC:MED&resulttype=core&format=json