The transcriptome of the bowhead whale Balaena mysticetus reveals adaptations of the longest-lived mammal (Q28651042)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Xuming Zhou

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Sang-Goo Lee

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

9

Vadim N Gladyshev

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Inge Seim

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Maxim V Gerashchenko

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Robert Suydam

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

John C George

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

John W Bickham

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

English

0 references

publication date

October 2014

0 references

published in

Aging

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

879-899

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

9 June 2020

limma

object named as

limma R package

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4247388

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

R package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii

17 March 2017

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17 March 2017

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Characterization of human Spartan/C1orf124, an ubiquitin-PCNA interacting regulator of DNA damage tolerance

17 March 2017

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Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown

17 March 2017

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17 March 2017

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MMS19 links cytoplasmic iron-sulfur cluster assembly to DNA metabolism

17 March 2017

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17 March 2017

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Genome sequencing reveals insights into physiology and longevity of the naked mole rat

17 March 2017

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

17 March 2017

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

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A supermatrix analysis of genomic, morphological, and paleontological data from crown Cetacea

17 March 2017

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Structural determinants of vascular endothelial growth factor-D receptor binding and specificity

17 March 2017

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A scaling normalization method for differential expression analysis of RNA-seq data

17 March 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

17 March 2017

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The role of positive selection in determining the molecular cause of species differences in disease

17 March 2017

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Hominin life history: reconstruction and evolution

17 March 2017

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Whales originated from aquatic artiodactyls in the Eocene epoch of India

17 March 2017

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28-way vertebrate alignment and conservation track in the UCSC Genome Browser

17 March 2017

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PAML 4: phylogenetic analysis by maximum likelihood

17 March 2017

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Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

17 March 2017

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Overexpression of Insig-1 in the livers of transgenic mice inhibits SREBP processing and reduces insulin-stimulated lipogenesis

17 March 2017

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Origin of whales from early artiodactyls: hands and feet of Eocene Protocetidae from Pakistan

17 March 2017

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

17 March 2017

1 reference

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The Fork head transcription factor DAF-16 transduces insulin-like metabolic and longevity signals in C. elegans

17 March 2017

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Evolution of human longevity and the genetic complexity governing aging rate

17 March 2017

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Structural basis for inhibition of the insulin receptor by the adaptor protein Grb14

17 March 2017

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

17 March 2017

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

7 April 2017

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

7 April 2017

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The evolution of gene expression levels in mammalian organs

7 April 2017

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Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes.

7 April 2017

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FTO is a relevant factor for the development of the metabolic syndrome in mice

3 June 2018

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Emerging functional similarities and divergences between Drosophila Spargel/dPGC-1 and mammalian PGC-1 protein

3 June 2018

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And the beat goes on: maintained cardiovascular function during aging in the longest-lived rodent, the naked mole-rat.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Killer whale nuclear genome and mtDNA reveal widespread population bottleneck during the last glacial maximum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

FTO contributes to hepatic metabolism regulation through regulation of leptin action and STAT3 signalling in liver

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Promoting longevity by maintaining metabolic and proliferative homeostasis

3 June 2018

1 reference

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Blood-Based Indicators of Insulin Resistance and Metabolic Syndrome in Bottlenose Dolphins (Tursiops truncatus)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Mechanisms of haptoglobin protection against hemoglobin peroxidation triggered endothelial damage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Molecular insights into the historic demography of bowhead whales: understanding the evolutionary basis of contemporary management practices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

ATIP3, a novel prognostic marker of breast cancer patient survival, limits cancer cell migration and slows metastatic progression by regulating microtubule dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Translational regulation of RPA2 via internal ribosomal entry site and by eIF3a

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

3 June 2018

1 reference

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Hemochromatosis and fatty liver disease: building evidence for insulin resistance in bottlenose dolphins (Tursiops truncatus).

3 June 2018

1 reference

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A phylogenetic blueprint for a modern whale

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

The naked mole-rat response to oxidative stress: just deal with it.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

The yak genome and adaptation to life at high altitude

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Hepatic insulin signaling is required for obesity-dependent expression of SREBP-1c mRNA but not for feeding-dependent expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Consistency test of the cell cycle: roles for p53 and EGR1.

3 June 2018

1 reference

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Evolution of the Arctic Calanus complex: an Arctic marine avocado?

3 June 2018

1 reference

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Requirement of argininosuccinate lyase for systemic nitric oxide production.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Modulation of longevity and tissue homeostasis by the Drosophila PGC-1 homolog.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Epigenetic alteration of PRKCDBP in colorectal cancers and its implication in tumor cell resistance to TNFα-induced apoptosis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Endothelial nitric oxide synthase is a key mediator of hepatocyte proliferation in response to partial hepatectomy in mice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

CREB and the CRTC co-activators: sensors for hormonal and metabolic signals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Quantitative reactivity profiling predicts functional cysteines in proteomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

The aging kidney: physiological changes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Cyfip1 is a putative invasion suppressor in epithelial cancers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Molecular determinants of Grb14-mediated inhibition of insulin signaling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

The role of nitrite in nitric oxide homeostasis: a comparative perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

DNA ligase I deficiency leads to replication-dependent DNA damage and impacts cell morphology without blocking cell cycle progression.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Expression of Arl2 is associated with p53 localization and chemosensitivity in a breast cancer cell line

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Regional variability in food availability for Arctic marine mammals.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Frequent epigenetic inactivation of hSRBC in gastric cancer and its implication in attenuated p53 response to stresses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Sequential and synergistic modification of human RPA stimulates chromosomal DNA repair

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

More genes underwent positive selection in chimpanzee evolution than in human evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

E4F1 is an atypical ubiquitin ligase that modulates p53 effector functions independently of degradation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Glycogen synthase kinase 3 and h-prune regulate cell migration by modulating focal adhesions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Pierolapithecus catalaunicus, a new Middle Miocene great ape from Spain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Increased adipose tissue expression of Grb14 in several models of insulin resistance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Improved glucose homeostasis and enhanced insulin signalling in Grb14-deficient mice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Distribution of nitric oxide synthase in normal and cirrhotic human liver

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Inhibition of insulin receptor catalytic activity by the molecular adapter Grb14.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Genome of the Chinese tree shrew

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

CITED2 links hormonal signaling to PGC-1α acetylation in the regulation of gluconeogenesis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Within- and between-species study of extreme longevity--comments, commonalities, and goals

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Dolphins as animal models for type 2 diabetes: sustained, post-prandial hyperglycemia and hyperinsulinemia.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Relationship between blood glucose levels and hepatic Fto mRNA expression in mice.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Nitric oxide increases myocardial efficiency in the hypoxia-tolerant turtle Trachemys scripta

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

PERP, a p53 proapoptotic target, mediates apoptotic cell death in renal ischemia

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Dual effect of the adapter growth factor receptor-bound protein 14 (grb14) on insulin action in primary hepatocytes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Long-lived growth hormone receptor knockout mice: interaction of reduced insulin-like growth factor i/insulin signaling and caloric restriction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Long-lived Drosophila with overexpressed dFOXO in adult fat body.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

EphA2 receptor tyrosine kinase regulates endothelial cell migration and vascular assembly through phosphoinositide 3-kinase-mediated Rac1 GTPase activation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247388

Vascular endothelial growth factor-D expression in human atherosclerotic lesions

27 November 2018

1 reference

12 December 2020

A New Field Record for Bat Longevity

1 reference

12 December 2020

Statistical properties of the branch-site test of positive selection

1 reference

12 December 2020

Genome stability, progressive kidney failure and aging

1 reference

12 December 2020

Over-expression of JunB inhibits mitochondrial stress and cytotoxicity in human lymphoma cells exposed to chronic oxidative stress

1 reference

12 December 2020

Signal transduction by vascular endothelial growth factor receptors

1 reference

12 December 2020

Identifiers

DOI

10.18632/AGING.100699

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25411232%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference