NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss (Q28649417)

12

0 references

Robert K. Jansen

11

object named as

Robert K Jansen

0 references

author name string

Tracey A Ruhlman

1

0 references

Wan-Jung Chang

2

0 references

Jeremy J W Chen

3

0 references

Yao-Ting Huang

4

0 references

Jin Zhang

6

0 references

De-Chih Liao

7

0 references

John C Blazier

8

0 references

Xiaohua Jin

9

0 references

Ming-Che Shih

Creative Commons Attribution 4.0 International

10

0 references

language of work or name

English

0 references

publication date

11 April 2015

0 references

published in

BMC Plant Biology

0 references

volume

15

0 references

issue

1

0 references

page(s)

100

0 references

copyright license

start time

11 April 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12870-015-0484-7

0 references

cites work

Flavonoids: a metabolic network mediating plants adaptation to their real estate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Phylotranscriptomic analysis of the origin and early diversification of land plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

To gibberellins and beyond! Surveying the evolution of (di)terpenoid metabolism

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

A functional phylogenomic view of the seed plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Phylogeny of seed plants based on evidence from eight genes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Increasing complexity and versatility: how the calcium signaling toolkit was shaped during plant land colonization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Role of the plant cell wall in gravity resistance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Central role of cyclic electron transport around photosystem I in the regulation of photosynthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The plastid genome of Najas flexilis: adaptation to submersed environments is accompanied by the complete loss of the NDH complex in an aquatic angiosperm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Plastid ndh genes in plant evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Origin and early evolution of angiosperms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Open reading frame ssr2016 is required for antimycin A-sensitive photosystem I-driven cyclic electron flow in the cyanobacterium Synechocystis sp. PCC 6803.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Cyclic electron flow around photosystem I is essential for photosynthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Photosynthesis by isolated chloroplasts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

The proton-pumping respiratory complex I of bacteria and mitochondria and its homologue in chloroplasts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Composition and physiological function of the chloroplast NADH dehydrogenase-like complex in Marchantia polymorpha.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

PROTON GRADIENT REGULATION5 is essential for proper acclimation of Arabidopsis photosystem I to naturally and artificially fluctuating light conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Efficient operation of NAD(P)H dehydrogenase requires supercomplex formation with photosystem I via minor LHCI in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

AtCYP20-2 is an auxiliary protein of the chloroplast NAD(P)H dehydrogenase complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Integrative study on proteomics, molecular physiology, and genetics reveals an accumulation of cyclophilin-like protein, TaCYP20-2, leading to an increase of Rht protein and dwarf in a novel GA-insensitive mutant (gaid) in Wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Phylogeny and Molecular Evolution of the Green Algae

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

First Miocene fossils of Vivianiaceae shed new light on phylogeny, divergence times, and historical biogeography of Geraniales

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

Phylogeny and Historical Biogeography of Geraniaceae in Relation to Climate Changes and Pollination Ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

An Src homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12870-015-0484-7

The cyclophilin CYP20-2 modulates the conformation of BRASSINAZOLE-RESISTANT1, which binds the promoter of FLOWERING LOCUS D to regulate flowering in Arabidopsis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404220

Targeted Inactivation of the PlastidndhBGene in Tobacco Results in an Enhanced Sensitivity of Photosynthesis to Moderate Stomatal Closure

27 November 2018

1 reference

12 December 2020

The role of chloroplastic NAD(P)H dehydrogenase in photoprotection

1 reference

12 December 2020

Six chloroplast genes (ndhA-F) homologous to human mitochondrial genes encoding components of the respiratory chain NADH dehydrogenase are actively expressed: Determination of the splice sites in ndhA and ndhB pre-mRNAs

1 reference

12 December 2020

Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice

1 reference

12 December 2020

Supercomplex formation with photosystem I is required for the stabilization of the chloroplast NADH dehydrogenase-like complex in Arabidopsis

1 reference

12 December 2020

10.1186/S12870-015-0484-7

Identifiers

DOI

1 reference

Dimensions Publication ID

525757

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12870-015-0484-7

525757

1 reference

1 reference

1 reference