A mass spectrometric-derived cell surface protein atlas (Q28546580)

Jean-Pierre Bourquin

16

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Ruedi Aebersold

17

Ruedi Aebersold

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Peter W Zandstra

19

Peter Zandstra

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Ferdinando Cerciello

Ferdinando Cerciello

5

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Rebekah L Gundry

Rebekah L Gundry

9

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Bernd Wollscheid

Bernd Wollscheid

20

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Alexander Schmidt

12

Alexander Schmidt

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author name string

Damaris Bausch-Fluck

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Andreas Hofmann

2

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Andreas P Frei

4

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Andrea Jacobs

6

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Hansjoerg Moest

7

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Ulrich Omasits

8

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Charles Yoon

10

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Ralph Schiess

11

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Paulina Mirkowska

13

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Anetta Härtlová

14

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Jennifer E Van Eyk

15

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Kenneth R Boheler

Creative Commons CC0 License

18

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language of work or name

English

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publication date

2015

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published in

PLOS One

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volume

10

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issue

3

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page(s)

e0121314

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copyright license

start time

20 April 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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describes a project that uses

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Identification of novel tumor-associated cell surface sialoglycoproteins in human glioblastoma tumors using quantitative proteomics

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

19 March 2017

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

19 March 2017

1 reference

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Global quantification of mammalian gene expression control

19 March 2017

1 reference

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Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Human Proteinpedia: a unified discovery resource for proteomics research

19 March 2017

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19 March 2017

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UniProt: the Universal Protein knowledgebase

19 March 2017

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Cloning of immunoglobulin-superfamily members associated with HLA-C and HLA-B recognition by human natural killer cells

19 March 2017

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PANTHER: a library of protein families and subfamilies indexed by function

19 March 2017

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PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

7 April 2017

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A combined transmembrane topology and signal peptide prediction method

7 April 2017

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Mass-spectrometry-based draft of the human proteome

7 April 2017

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A draft map of the human proteome

7 April 2017

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Towards a knowledge-based Human Protein Atlas

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

A human pluripotent stem cell surface N-glycoproteome resource reveals markers, extracellular epitopes, and drug targets.

24 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Intratumoral IL-12 combined with CTLA-4 blockade elicits T cell-mediated glioma rejection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Protter: interactive protein feature visualization and integration with experimental proteomic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Proteomic analysis reveals drug accessible cell surface N-glycoproteins of primary and established glioblastoma cell lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

The stalk domain and the glycosylation status of the activating natural killer cell receptor NKp30 are important for ligand binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Identification and functional characterization of pVHL-dependent cell surface proteins in renal cell carcinoma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

CD proteome and beyond - technologies for targeting the immune cell surfaceome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

The quantitative proteome of a human cell line.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

SIRPA is a specific cell-surface marker for isolating cardiomyocytes derived from human pluripotent stem cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Mass spectrometry accelerates membrane protein analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Plasma membrane proteomics and its application in clinical cancer biomarker discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

A guided tour of the Trans-Proteomic Pipeline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Bioinformatics construction of the human cell surfaceome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Platelet membrane proteomics: a novel repository for functional research

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

PhosphoPep--a database of protein phosphorylation sites in model organisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Stem cell markers: insights from membrane proteomics?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Building consensus spectral libraries for peptide identification in proteomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Decoding protein modifications using top-down mass spectrometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Mammalian plasma membrane proteomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Medical applications of leukocyte surface molecules--the CD molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Expression profiling of lymphocyte plasma membrane proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Monoclonal antibody defining a stage-specific mouse embryonic antigen (SSEA-1)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Quantitative proteomic analysis of the adipocyte plasma membrane.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404347

Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics

3 June 2018

1 reference

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Rituximab: a new therapeutic monoclonal antibody for non-Hodgkin's lymphoma.

3 June 2018

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Central nervous system antigen P84 can serve as a substrate for neurite outgrowth.

3 June 2018

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Determination of relative protein abundance by internally normalized ratio algorithm with antibody arrays

3 June 2018

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Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

Leukemia surfaceome analysis reveals new disease-associated features.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

Malfunctioning of adipocytes in obesity is linked to quantitative surfaceome changes

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

A novel classification of quiescent and transit amplifying adult neural stem cells by surface and metabolic markers permits a defined simultaneous isolation.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

In vivo protein biotinylation and sample preparation for the proteomic identification of organ- and disease-specific antigens accessible from the vasculature

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

Production of a monoclonal antibody specific for Hodgkin and Sternberg–Reed cells of Hodgkin's disease and a subset of normal lymphoid cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0121314

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

21 January 2018

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12 December 2020

The definition of cell type

1 reference

12 December 2020

Phase II study of weekly intravenous trastuzumab (Herceptin) in patients with HER2/neu-overexpressing metastatic breast cancer

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12 December 2020

Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies

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12 December 2020

Protein quantification in label-free LC-MS experiments

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12 December 2020

Immunophenotyping of leukemias using a cluster of differentiation antibody microarray

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12 December 2020

Isolation of cell surface proteins for mass spectrometry-based proteomics

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12 December 2020

10.1371/JOURNAL.PONE.0121314

Identifiers

DOI

1 reference

2964956

ADS bibcode

2015PLoSO..1021314B

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2964956

1 reference

1 reference

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