Interaction of APOBEC3A with DNA assessed by atomic force microscopy (Q28539478)

April 2022 Public Data File from Crossref

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describes a project that uses

atomic force microscopy

1 reference

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cites work

Multiple APOBEC3 restriction factors for HIV-1 and one Vif to rule them all

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NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity

19 March 2017

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The APOBEC3C crystal structure and the interface for HIV-1 Vif binding

19 March 2017

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APOBEC3A, APOBEC3B, and APOBEC3H haplotype 2 restrict human T-lymphotropic virus type 1

19 March 2017

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First-in-class small molecule inhibitors of the single-strand DNA cytosine deaminase APOBEC3G

19 March 2017

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Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1

19 March 2017

1 reference

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Structure-function analyses point to a polynucleotide-accommodating groove essential for APOBEC3A restriction activities

19 March 2017

1 reference

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Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G

19 March 2017

1 reference

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Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

APOBEC3 proteins mediate the clearance of foreign DNA from human cells

19 March 2017

1 reference

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Deaminase-independent inhibition of parvoviruses by the APOBEC3A cytidine deaminase

19 March 2017

1 reference

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An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model

19 March 2017

1 reference

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Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

19 March 2017

1 reference

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Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

19 March 2017

1 reference

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APOBEC3F can inhibit the accumulation of HIV-1 reverse transcription products in the absence of hypermutation. Comparisons with APOBEC3G

19 March 2017

1 reference

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APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons

19 March 2017

1 reference

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APOBEC3 multimerization correlates with HIV-1 packaging and restriction activity in living cells.

19 March 2017

1 reference

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Atomic force microscopy studies of APOBEC3G oligomerization and dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis

29 September 2017

1 reference

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APOBEC3B is an enzymatic source of mutation in breast cancer.

29 September 2017

1 reference

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Mica functionalization for imaging of DNA and protein-DNA complexes with atomic force microscopy

29 September 2017

1 reference

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Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Biochemical analysis of hypermutation by the deoxycytidine deaminase APOBEC3A.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Antiviral Mechanism and Biochemical Basis of the Human APOBEC3 Family.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Single-stranded DNA scanning and deamination by APOBEC3G cytidine deaminase at single molecule resolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Specificity of binding of single-stranded DNA-binding protein to its target

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Evolution of the primate APOBEC3A cytidine deaminase gene and identification of related coding regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Structural Features of Antiviral APOBEC3 Proteins are Linked to Their Functional Activities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

APOBEC3 proteins and genomic stability: the high cost of a good defense

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Direct evidence that RNA inhibits APOBEC3G ssDNA cytidine deaminase activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Deaminase activity on single-stranded DNA (ssDNA) occurs in vitro when APOBEC3G cytidine deaminase forms homotetramers and higher-order complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

APOBEC3A can activate the DNA damage response and cause cell-cycle arrest

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Atomic force microscopy studies provide direct evidence for dimerization of the HIV restriction factor APOBEC3G

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

A single amino acid in human APOBEC3F alters susceptibility to HIV-1 Vif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Stably expressed APOBEC3F has negligible antiviral activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Long-term restriction by APOBEC3F selects human immunodeficiency virus type 1 variants with restored Vif function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

APOBEC3F and APOBEC3G inhibit HIV-1 DNA integration by different mechanisms.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Inhibition of alpharetrovirus replication by a range of human APOBEC3 proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

T cells contain an RNase-insensitive inhibitor of APOBEC3G deaminase activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Differential inhibition of long interspersed element 1 by APOBEC3 does not correlate with high-molecular-mass-complex formation or P-body association

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

Antiviral potency of APOBEC proteins does not correlate with cytidine deamination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048275

29 September 2017

1 reference

https://pubmed.ncbi.nlm.nih.gov/24905100