Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing (Q28482493)

Thomas N Denny

11

0 references

Ruy M. Ribeiro

Ruy M Ribeiro

14

0 references

Tanmoy Bhattacharya

Tanmoy Bhattacharya

17

0 references

Bette Korber

Bette T Korber

16

0 references

Beatrice H. Hahn

Beatrice H Hahn

13

0 references

Barton Haynes

12

Barton F Haynes

0 references

George M. Shaw

18

George M Shaw

0 references

Alan S. Perelson

15

Alan S Perelson

0 references

Michael Saag

10

Michael S Saag

0 references

Gerald H Learn

7

Gerald H Learn

0 references

Lily M Blair

4

Lily M Blair

0 references

Erica H Parrish

6

Erica H Parrish

0 references

Paul A Goepfert

9

Paul A Goepfert

0 references

Elena E Giorgi

5

Elena E Giorgi

0 references

author name string

Hui Li

1

0 references

Mark B Stoddard

2

0 references

Shuyi Wang

Creative Commons CC0 License

3

0 references

language of work or name

English

0 references

publication date

2012

0 references

published in

PLOS Pathogens

0 references

volume

8

0 references

page(s)

e1002880

0 references

issue

8

0 references

copyright license

start time

23 August 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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A trans-Complementing Recombination Trap Demonstrates a Low Propensity of Flaviviruses for Intermolecular Recombination

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Hepatitis C virus versus innate and adaptive immune responses: a tale of coevolution and coexistence

19 March 2017

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Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

19 March 2017

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Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients

19 March 2017

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Viral Sequence Evolution in Acute Hepatitis C Virus Infection

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Replication of hepatitis C virus

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19 March 2017

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Identification of a Naturally Occurring Recombinant Genotype 2/6 Hepatitis C Virus

19 March 2017

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Quantitative Analysis of the Hepatitis C Virus Replication Complex

19 March 2017

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Cellular immune selection with hepatitis C virus persistence in humans

19 March 2017

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Immune evasion versus recovery after acute hepatitis C virus infection from a shared source

19 March 2017

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Wide range of quasispecies diversity during primary hepatitis C virus infection

19 March 2017

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CD8 Epitope Escape and Reversion in Acute HCV Infection

19 March 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

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Determinants of viral clearance and persistence during acute hepatitis C virus infection

19 March 2017

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Assessment of hepatitis C virus sequence complexity by electrophoretic mobilities of both single-and double-stranded DNAs

19 March 2017

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Genetic diversity and evolution of hepatitis C virus--15 years on

19 March 2017

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HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

7 April 2017

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Rates of evolutionary change in viruses: patterns and determinants

7 April 2017

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Telaprevir for previously untreated chronic hepatitis C virus infection

7 April 2017

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Boceprevir for untreated chronic HCV genotype 1 infection

7 April 2017

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

7 April 2017

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Adaptive immune responses in acute and chronic hepatitis C virus infection

7 April 2017

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The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies

7 April 2017

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Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

7 April 2017

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Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate

7 April 2017

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Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape

29 September 2017

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Infectivity in chimpanzees (Pan troglodytes) of plasma collected before HCV RNA detectability by FDA-licensed assays: implications for transfusion safety and HCV infection outcomes

29 September 2017

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Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages

29 September 2017

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Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance

29 September 2017

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Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection

29 September 2017

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Phenotypic and immunologic comparison of clade B transmitted/founder and chronic HIV-1 envelope glycoproteins

29 September 2017

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Delayed induction, not impaired recruitment, of specific CD8⁺ T cells causes the late onset of acute hepatitis C

29 September 2017

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Turning hepatitis C into a real virus

29 September 2017

1 reference

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Treatment failure and resistance with direct-acting antiviral drugs against hepatitis C virus

29 September 2017

1 reference

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Predicting spontaneous clearance of acute hepatitis C virus in a large cohort of HIV-1-infected men.

29 September 2017

1 reference

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Dynamic coinfection with multiple viral subtypes in acute hepatitis C.

29 September 2017

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Estimating time since infection in early homogeneous HIV-1 samples using a poisson model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426529

IL28B and the control of hepatitis C virus infection

29 September 2017

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High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

29 September 2017

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Wide variation in the multiplicity of HIV-1 infection among injection drug users

29 September 2017

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Hepatitis C virus transmission bottlenecks analyzed by deep sequencing.

29 September 2017

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Acceleration of hepatitis C virus envelope evolution in humans is consistent with progressive humoral immune selection during the transition from acute to chronic infection

29 September 2017

1 reference

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Acute hepatitis C virus infection in young adult injection drug users: a prospective study of incident infection, resolution, and reinfection

29 September 2017

1 reference

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Modeling sequence evolution in acute HIV-1 infection

29 September 2017

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Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

29 September 2017

1 reference

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426529

Evidence of a large, international network of HCV transmission in HIV-positive men who have sex with men

29 September 2017

1 reference

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Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

29 September 2017

1 reference

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Selection pressure from neutralizing antibodies drives sequence evolution during acute infection with hepatitis C virus

29 September 2017

1 reference

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Cross-border paid plasma donation among injection drug users in two Mexico-U.S. border cities

29 September 2017

1 reference

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Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426529

Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426529

High specific infectivity of plasma virus from the pre-ramp-up and ramp-up stages of acute simian immunodeficiency virus infection

29 September 2017

1 reference

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HIV-1 transmission, by stage of infection

29 September 2017

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29 September 2017

1 reference

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Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

29 September 2017

1 reference

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High rates of forward transmission events after acute/early HIV-1 infection

29 September 2017

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Prospects for a vaccine against the hepatitis C virus

29 September 2017

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Comprehensive analyses of CD8+ T cell responses during longitudinal study of acute human hepatitis C.

29 September 2017

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Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda

29 September 2017

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Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis

29 September 2017

1 reference

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Accurate representation of the hepatitis C virus quasispecies in 5.2-kilobase amplicons

29 September 2017

1 reference

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Pervasive genomic recombination of HIV-1 in vivo

29 September 2017

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Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1

29 September 2017

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DNA recombination during PCR.

29 September 2017

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Genotype 1 and global hepatitis C T-cell vaccines designed to optimize coverage of genetic diversity.

29 September 2017

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Virus 'quasispecies': making a mountain out of a molehill?

2 June 2018

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Sexual transmission of hepatitis C virus among HIV-infected men who have sex with men--New York City, 2005-2010.

2 June 2018

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A new era of hepatitis C therapy begins

27 November 2018

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Acute hepatitis C virus infection: a dynamic-and challenging-concept.

27 November 2018

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A step forward in therapy for hepatitis C.

27 November 2018

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27 November 2018

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Dynamics of viremia in early hepatitis C virus infection

27 November 2018

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HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection

27 November 2018

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Full-length open reading frame of a recombinant hepatitis C virus strain from St Petersburg: proposed mechanism for its formation

27 November 2018

1 reference

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From RNA to quasispecies: a DNA polymerase with proofreading activity is highly recommended for accurate assessment of viral diversity

27 November 2018

1 reference

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Sexual transmission during the incubation period of primary HIV infection

27 November 2018

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12 December 2020

Novel CD4+ and CD8+ T-cell determinants within the NS3 protein in subjects with spontaneously resolved HCV infection

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12 December 2020

HIV Quasispecies and Resampling

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12 December 2020

"Lifespan" of liver cells. Autoradio-graphic study using tritiated thymidine in normal, cirrhotic, and partially hepatectomized rats

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12 December 2020