Structure-templated predictions of novel protein interactions from sequence information (Q28469306)

3

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Doron Betel

1

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author name string

Kevin E Breitkreuz

2

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Danielle Dewar-Darch

4

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Mike Tyers

5

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Christopher W V Hogue

PLOS Computational Biology

6

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language of work or name

English

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publication date

September 2007

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published in

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volume

3

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page(s)

1783-9

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issue

9

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copyright license

Creative Commons Attribution 4.0 International

start time

21 September 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain

19 March 2017

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Proteome survey reveals modularity of the yeast cell machinery

19 March 2017

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The impact of structural genomics: expectations and outcomes

19 March 2017

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Systematic discovery of new recognition peptides mediating protein interaction networks

19 March 2017

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A quantitative protein interaction network for the ErbB receptors using protein microarrays

19 March 2017

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Inferring protein domain interactions from databases of interacting proteins

19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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Mechanisms for regulation of Hsp70 function by Hsp40

19 March 2017

1 reference

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A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

19 March 2017

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IntAct: an open source molecular interaction database

19 March 2017

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The Database of Interacting Proteins: 2004 update

19 March 2017

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RAM: a conserved signaling network that regulates Ace2p transcriptional activity and polarized morphogenesis

19 March 2017

1 reference

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Assembly of Cell Regulatory Systems Through Protein Interaction Domains

19 March 2017

1 reference

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The InterPro database, 2003 brings increased coverage and new features

19 March 2017

1 reference

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Characterization of a Saccharomyces cerevisiae NADP(H)-dependent alcohol dehydrogenase (ADHVII), a member of the cinnamyl alcohol dehydrogenase family

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Life sentences: Ontology recapitulates philology

19 March 2017

1 reference

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Functional organization of the yeast proteome by systematic analysis of protein complexes

19 March 2017

1 reference

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A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

The Cbk1p pathway is important for polarized cell growth and cell separation in Saccharomyces cerevisiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Convergent solutions to binding at a protein-protein interface

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Genetic analysis and enzyme activity suggest the existence of more than one minimal functional unit capable of synthesizing phosphoribosyl pyrophosphate in Saccharomyces cerevisiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Sequence logos: a new way to display consensus sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Global analysis of protein phosphorylation in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

CDD: a curated Entrez database of conserved domain alignments

7 April 2017

1 reference

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MINT: a Molecular INTeraction database

7 April 2017

1 reference

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Deciphering protein-protein interactions. Part I. Experimental techniques and databases

7 April 2017

1 reference

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Predicting protein-protein interactions based only on sequences information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Predicting domain-domain interactions using a parsimony approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Herpesviral protein networks and their interaction with the human proteome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Conserved patterns of protein interaction in multiple species

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Predicting protein-peptide interactions via a network-based motif sampler

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Exploring bias in the Protein Data Bank using contrast classifiers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Discovery of binding motif pairs from protein complex structural data and protein interaction sequence data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Gibbs Recursive Sampler: finding transcription factor binding sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Inferring domain-domain interactions from protein-protein interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Automatic annotation of BIND molecular interactions from three-dimensional structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Multisubunit RNA polymerases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Mapping specificity determinants for protein-protein association using protein fusions and random peptide libraries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Cell communication: the inside story

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Interactions between three common subunits of yeast RNA polymerases I and III.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Structure-based assembly of protein complexes in yeast.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Target space for structural genomics revisited.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

PQS: a protein quaternary structure file server.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1988853

Probabilistic model of the human protein-protein interaction network

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17892321

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030182

0 references

DBLP publication ID

journals/ploscb/BetelBIDTH07

1 reference