Knowledge-Based Protein Modeling (Q28315523)

Critical Reviews in Biochemistry and Molecular Biology

Europe PubMed Central

title

Knowledge-Based Protein Modeling (English)

0 references

4

Tom L Blundell

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Narayanaswamy Srinivasan

series ordinal

2

object named as

Narayanaswamy Srinivasan

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author name string

Mark S. Johnson

series ordinal

1

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Ramanathan Sowdhamini

series ordinal

3

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publication date

January 1994

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published in

1 reference

Protein structure alignment

PubMed

volume

29

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page(s)

1-68

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issue

1

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cites work

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Structure of porphobilinogen deaminase reveals a flexible multidomain polymerase with a single catalytic site

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Establishing homologies in protein sequences

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One thousand families for the molecular biologist

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Catching a common fold

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Knowledge-based prediction of protein structures and the design of novel molecules

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From comparisons of protein sequences and structures to protein modelling and design

21 January 2018

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A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme

21 January 2018

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Computation of structures of homologous proteins. .alpha.-Lactalbumin from lysozyme

21 January 2018

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Refined structure of baboon α-lactalbumin at 1.7 Å resolution

21 January 2018

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Molecular structure of the α-lytic protease from Myxobacter 495 at 2·8 Å resolution

21 January 2018

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Comparison of the predicted model of α-lytic protease with the X-ray structure

21 January 2018

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Insulin-like growth factor: a model for tertiary structure accounting for immunoreactivity and receptor binding

21 January 2018

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Solution structure of human insulin-like growth factor 1: a nuclear magnetic resonance and restrained molecular dynamics study

21 January 2018

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Model for haptoglobin heavy chain based upon structural homology

21 January 2018

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Critical evaluation of comparative model building of Streptomyces griseus trypsin.

21 January 2018

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Myxococcus xanthus spore coat protein S may have a similar structure to vertebrate lens beta gamma-crystallins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

X-ray analysis of beta B2-crystallin and evolution of oligomeric lens proteins

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative modeling of proteins in the design of novel renin inhibitors

21 January 2018

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Three-dimensional structure, specificity and catalytic mechanism of renin

21 January 2018

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Renin inhibitors. Design and synthesis of a new class of conformationally restricted analogues of angiotensinogen.

21 January 2018

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Determination of the complete three-dimensional structure of the alpha-amylase inhibitor tendamistat in aqueous solution by nuclear magnetic resonance and distance geometry

21 January 2018

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Stereochemical quality of protein structure coordinates

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239409086797

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239409086797

Database of homology-derived protein structures and the structural meaning of sequence alignment

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239409086797

A data bank merging related protein structures and sequences

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409239409086797

Construction of validated, non-redundant composite protein sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Rapid and sensitive protein similarity searches

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Protein database searches for multiple alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

An improved algorithm for matching biological sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative biosequence metrics

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Applications and statistics for multiple high-scoring segments in molecular sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

An improved method of testing for evolutionary homology

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Detecting homology of distantly related proteins with consensus sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Recognition of functional regions in primary structures using a set of property patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Alignment and searching for common protein folds using a data bank of structural templates

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Aligning amino acid sequences: Comparison of commonly used methods

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Two types of amino acid substitutions in protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Exhaustive matching of the entire protein sequence database

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A method for the simultaneous alignment of three or more amino acid sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Simultaneous comparison of three protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A tool for multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Profile analysis: detection of distantly related proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Evaluation and improvements in the automatic alignment of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Determination of reliable regions in protein sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A simple method to generate non-trivial alternate alignments of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Suboptimal sequence alignment in molecular biology

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Towards an automatic method of predicting protein structure by homology: an evaluation of suboptimal sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A new approach to protein fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Contact potential that recognizes the correct folding of globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Topology fingerprint approach to the inverse protein folding problem

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. I. Six-member, Greek key beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modelling of the lignin peroxidase LIII of Phlebia radiata: use of a sequence template generated from a 3-D structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Chymotrypsinogen: 2,5-Å crystal structure, comparison with α-chymotrypsin, and implications for zymogen activation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The Atomic Structure of Erythrocruorin in the Light of the Chemical Sequence and its Comparison with Myoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Gene duplications in the structural evolution of chymotrypsin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Correlation of DNA exonic regions with protein structural units in haemoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modular structural units, exons, and function in chicken lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparison of homologous tertiary structures of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparison of super-secondary structures in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The Evolution of Dehydrogenases and Kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Exploring structural homology of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The taxonomy of protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Phylogenetic relationships from three-dimensional protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Detection of common three-dimensional substructures in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A holistic approach to protein structure alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A rapid method of protein structure alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Fast structure alignment for protein databank searching

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparing short protein substructures by a method based on backbone torsion angles.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A variable gap penalty function and feature weights for protein 3-D structure comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A fast unbiased comparison of protein structures by means of the Needleman-Wunsch algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Defining topologigical equivalences in macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Analysis of protein sheet topologies by graph theoretical methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Use of techniques derived from graph theory to compare secondary structure motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The anatomy and taxonomy of protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structural resemblance between the families of bacterial signal-transduction proteins and of G proteins revealed by graph theoretical techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Three-dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase A revealed by graph-theoretical techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Phylogenies from molecular sequences: inference and reliability

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Confidence limits on the branching order of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structure prediction and modelling.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative modeling of homologous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

18th Sir Hans Krebs lecture. Knowledge-based protein modelling and design

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative modeling methods: application to the family of the mammalian serine proteases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modelling the polypeptide backbone with 'spare parts' from known protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Accurate modeling of protein conformation by automatic segment matching

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Application of a directed conformational search for generating 3-D coordinates for protein structures from alpha-carbon coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Building protein backbones from C alpha coordinates.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Rebuilding flavodoxin from C alpha coordinates: a test study.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Evolution and the tertiary structure of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Loops in globular proteins: a novel category of secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Conformation of beta hairpins in protein structures: classification and diversity in homologous structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The Reverse Turn as a Polypeptide Conformation in Globular Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Analysis and prediction of the different types of beta-turn in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Beta-turns and their distortions: a proposed new nomenclature.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prediction of protein conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Beta-hairpin families in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structural and sequence patterns in the loops of beta alpha beta units.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Analysis, design and modification of loop regions in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Accommodating sequence changes in beta-hairpins in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Orthogonal beta beta motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Taxonomy and conformational analysis of loops in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structure of α-α-hairpins with short connections

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Differences in the amino acid distributions of 3(10)-helices and alpha-helices

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Three-dimensional structure of catalase from Penicillium vitale at 2.0 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Extended helical conformation newly observed in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

New domain motif: the structure of pectate lyase C, a secreted plant virulence factor

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The parallel beta helix of pectate lyase C: something to sneeze at.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

X-ray analysis (1. 4-A resolution) of avian pancreatic polypeptide: Small globular protein hormone

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Occurrence of a single helix of the collagen type in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A novel supersecondary structure in globular proteins comprising the collagen-like helix and beta-turn.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Left-handed polyproline II helices commonly occur in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Conformation of amino acid side-chains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A survey of amino acid side-chain interactions in 21 proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Aromatic-aromatic interaction: a mechanism of protein structure stabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The geometries of interacting arginine-carboxyls in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Pi-pi interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Side-chain clusters in protein structures and their role in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Areas, volumes, packing and protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prediction of protein side-chain conformation by packing optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

21 January 2018

Ion-pairs in proteins.

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Hydrogen bonding in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Hydrogen bonding in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Distributions of water around amino acid residues in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Disulphide bridges in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Optimal protocol and trajectory visualization for conformational searches of peptides and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prediction of homologous protein structures based on conformational searches and energetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A new method for building protein conformations from sequence alignments with homologues of known structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

An automated method for modeling proteins on known templates using distance geometry

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Why do globular proteins fit the limited set of folding patterns?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A geometrical constraint approach for reproducing the native backbone conformation of a protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Adaptability of restrained molecular dynamics for tertiary structure prediction: application to Crotalus atrox venom phospholipase A2.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A novel approach to prediction of the 3-dimensional structures of protein backbones by neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Generalized protein tertiary structure recognition using associative memory Hamiltonians.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prediction of the three-dimensional structures of the biotinylated domain from yeast pyruvate carboxylase and of the lipoylated H-protein from the pea leaf glycine cleavage system: a new automated method for the prediction of protein tertiary struct

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Rhodopsin's protein and carbohydrate structure: selected aspects.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The hydrophobic moment detects periodicity in protein hydrophobicity

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Topography of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Identification of protein folds: matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structure of the reaction center from Rhodobacter sphaeroides R-26 and 2.4.1: symmetry relations and sequence comparisons between different species

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Hydrophobic organization of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Ligand binding to the beta-adrenergic receptor involves its rhodopsin-like core

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A three-dimensional model of the Photosystem II reaction centre of Pisum sativum.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

On the use of the transmembrane domain of bacteriorhodopsin as a template for modeling the three-dimensional structure of guanine nucleotide-binding regulatory protein-coupled receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Models for the structure of outer-membrane proteins of Escherichia coli derived from raman spectroscopy and prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Protein structure. The shape of things to come?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

An analysis of incorrectly folded protein models. Implications for structure predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The nature of the accessible and buried surfaces in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Protein model structure evaluation using the solvation free energy of folding

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Assessment of protein models with three-dimensional profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Exploration of subsite binding specificity of human cathepsin D through kinetics and rule-based molecular modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

X-ray analyses of peptide-inhibitor complexes define the structural basis of specificity for human and mouse renins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Domain flexibility in aspartic proteinases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Revised 2.3 A structure of porcine pepsin: evidence for a flexible subdomain

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Molecular and crystal structures of monoclinic porcine pepsin refined at 1.8 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The structure of rat mast cell protease II at 1.9-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Thermitase, a thermostable subtilisin: comparison of predicted and experimental structures and the molecular cause of thermostability

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prothoracicotrophic hormone has an insulin-like tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A structural model for the retroviral proteases.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A predicted three-dimensional structure for the human immunodeficiency virus binding domains of CD4 antigen

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Molecular modeling of the HIV-1 protease and its substrate binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Furin is a subtilisin-like proprotein processing enzyme in higher eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A molecular model for the enzyme cytochrome P450(17 alpha), a major target for the chemotherapy of prostatic cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modelling by homology of RNA binding domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structural features of neutral protease from Bacillus subtilis deduced from model-building and limited proteolysis experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Generation of potential structures for the G-domain of chloroplast EF-Tu using comparative molecular modeling.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modeling the three-dimensional structure of the monocyte chemo-attractant and activating protein MCAF/MCP-1 on the basis of the solution structure of interleukin-8.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative modeling of mammalian aspartate transcarbamylase

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Engineering of the Lactococcus lactis serine proteinase by construction of hybrid enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Humanization of a mouse monoclonal antibody by CDR–grafting: the importance of framework residues on loop conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Molecular model-building of amylin and alpha-calcitonin gene-related polypeptide hormones using a combination of knowledge sources.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structural models of ribonuclease H domains in reverse transcriptases from retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Complete sequence and model for the C1 subunit of the carotenoprotein, crustacyanin, and model for the dimer, beta-crustacyanin, formed from the C1 and A2 subunits with astaxanthin.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Molecular modeling of antibody-antigen complexes between the Brucella abortus O-chain polysaccharide and a specific monoclonal antibody

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Structural model of the nucleotide-binding conserved component of periplasmic permeases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparative molecular modeling and crystallization of P-30 protein: a novel antitumor protein of Rana pipiens oocytes and early embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Homology model of thyroxine binding globulin and elucidation of the thyroid hormone binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modeling the anti-CEA antibody combining site by homology and conformational search

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Computational approach towards the three-dimensional structure of E. coli tyrosine aminotransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Computer modeling of two inorganic pyrophosphatases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modelling the carbohydrate recognition domain of human E-selectin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Prediction of the three-dimensional structures of the nerve growth factor and epidermal growth factor binding proteins (kallikreins) and an hypothetical structure of the high molecular weight complex of epidermal growth factor with its binding prote

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Modeling the structure of Pyrococcus furiosus rubredoxin by homology to other X-ray structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Homology modelling and protein engineering strategy of subtilases, the family of subtilisin-like serine proteinases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Solution structure of murine epidermal growth factor: determination of the polypeptide backbone chain-fold by nuclear magnetic resonance and distance geometry

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Solution structure of murine epidermal growth factor determined by NMR spectroscopy and refined by energy minimization with restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Solution structures of the rabbit neutrophil defensin NP-5.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

On the Theory and Computation of Evolutionary Distances

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Turns in peptides and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Loops, bulges, turns and hairpins in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Conformation of β-hairpins in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

21 January 2018

Aromatic Interactions

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Flexible protein sequence patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

A Structural Basis for Sequence Comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Correctly folded proteins make twice as many hydrophobic contacts

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The first lipocalin with enzymatic activity

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Efficient algorithm for the reconstruction of a protein backbone from the ?-carbon coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Proposed structure for the DNA-binding domain of the Myb oncoprotein based on model building and mutational analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Relaxin has conformational homology with insulin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The molecular structure and stability of the eye lens: X-ray analysis of γ-crystallin II

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797

Projection structure of rhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239409086797