Measuring covariation in RNA alignments: physical realism improves information measures (Q28268281)

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

MSARI: multiple sequence alignments for statistical detection of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

RNA sequence analysis using covariance models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

A comprehensive comparison of comparative RNA structure prediction approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

A benchmark of multiple sequence alignment programs upon structural RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Finding the most significant common sequence and structure motifs in a set of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

MatrixPlot: visualizing sequence constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Rfam: an RNA family database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Secondary structure prediction for aligned RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Alignment of RNA base pairing probability matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Pfold: RNA secondary structure prediction using stochastic context-free grammars

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

The non-Watson-Crick base pairs and their associated isostericity matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Using information theory to search for co-evolving residues in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

RNA folding and unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Identification and classification of conserved RNA secondary structures in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Noncoding RNA gene detection using comparative sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

5S Ribosomal RNA Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Fast and reliable prediction of noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTL514

10.1093/BIOINFORMATICS/BTL514

21 January 2018

Identifiers

DOI

0 references

DBLP publication ID

journals/bioinformatics/LindgreenGK06

1 reference

DBLP Dataset 2021-01-02