Rapid diversification of five Oryza AA genomes associated with rice adaptation (Q28250895)

3

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7 June 2020

Dayun Tao

19

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7 June 2020

21

Jeffrey L Bennetzen

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7 June 2020

author name string

Qun-Jie Zhang

1

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7 June 2020

Ting Zhu

2

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7 June 2020

Chao Shi

4

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7 June 2020

Yun-Long Liu

5

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7 June 2020

Yun Zhang

6

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7 June 2020

Yuan Liu

7

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7 June 2020

Wen-Kai Jiang

8

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7 June 2020

You-Jie Zhao

9

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7 June 2020

Shu-Yan Mao

10

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7 June 2020

Li-Ping Zhang

11

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7 June 2020

Hui Huang

12

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7 June 2020

Jun-Ying Jiao

13

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7 June 2020

Ping-Zhen Xu

14

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7 June 2020

Qiu-Yang Yao

15

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7 June 2020

Fan-Chun Zeng

16

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7 June 2020

Li-Li Yang

17

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7 June 2020

Ju Gao

18

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7 June 2020

Yue-Ju Wang

20

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7 June 2020

Li-Zhi Gao

22

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Proceedings of the National Academy of Sciences of the United States of America

7 June 2020

language of work or name

English

0 references

publication date

18 November 2014

0 references

published in

1 reference

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7 June 2020

volume

111

1 reference

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7 June 2020

issue

46

1 reference

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7 June 2020

page(s)

E4954-62

1 reference

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Insights into hominid evolution from the gorilla genome sequence

7 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The draft genome of the parasitic nematode Trichinella spiralis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

miRBase: integrating microRNA annotation and deep-sequencing data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

De novo assembly of human genomes with massively parallel short read sequencing

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Origin, biogenesis, and activity of plant microRNAs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Evolution of genes and genomes on the Drosophila phylogeny

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Versatile and open software for comparing large genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Human-mouse alignments with BLASTZ

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Molecular evolution of flower development: diversification of the plant MADS-box regulatory gene family

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Recent segmental duplications in the human genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The map-based sequence of the rice genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

De novo identification of repeat families in large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Automated de novo identification of repeat sequence families in sequenced genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The plant proteome folding project: structure and positive selection in plant protein families

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Speciation genes in plants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Insights from the comparison of plant genome sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The molecular evolutionary basis of species formation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Transposable element distribution, abundance and role in genome size variation in the genus Oryza

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Patterns in grass genome evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Rapid recent growth and divergence of rice nuclear genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

MAVID: constrained ancestral alignment of multiple sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

A killer-protector system regulates both hybrid sterility and segregation distortion in rice

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

A burst of segmental duplications in the genome of the African great ape ancestor

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Seed banks and molecular maps: unlocking genetic potential from the wild

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4246335

Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Multilocus estimation of divergence times and ancestral effective population sizes of Oryza species and implications for the rapid diversification of the genus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Genetic control of rice plant architecture under domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Control of a key transition from prostrate to erect growth in rice domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Speciation as an active force in promoting genetic evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418307111

Population structure and conservation genetics of wild rice Oryza rufipogon (Poaceae): a region-wide perspective from microsatellite variation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25368197

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1418307111

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25368197%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

ADS bibcode

2014PNAS..111E4954Z

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25368197%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25368197%20AND%20SRC:MED&resulttype=core&format=json