Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulation (Q28208662)

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scientific article (publication date: 21 February 2003)

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English	Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulation	scientific article (publication date: 21 February 2003)

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scholarly article

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Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulation (English)

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author name string

Neeta Pillai-Nair

1

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Kook Hyung Kim

2

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Cynthia Hemenway

3

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language of work or name

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publication date

21 February 2003

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Journal of Molecular Biology

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326

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3

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701-20

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describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7126608/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

FUNCTIONS OF THE 3'-UNTRANSLATED REGIONS OF POSITIVE STRAND RNA VIRAL GENOMES.

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Manipulating plant viral RNA transcription signals.

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5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis

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A long-range pseudoknot in Qbeta RNA is essential for replication

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The 3' untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro

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The 3'-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein

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A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA.

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A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation

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A primary determinant of cap-independent translation is located in the 3'-proximal region of the tomato bushy stunt virus genome.

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Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system

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cis-acting sequences required for coronavirus infectious bronchitis virus defective-RNA replication and packaging.

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Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates

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Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

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A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex

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Recognition of the core RNA promoter for minus-strand RNA synthesis by the replicases of Brome mosaic virus and Cucumber mosaic virus

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Replication of tobacco mosaic virus RNA

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CCA initiation boxes without unique promoter elements support in vitro transcription by three viral RNA-dependent RNA polymerases

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Deletion analysis of cis- and trans-acting elements involved in replication of alfalfa mosaic virus RNA 3 in Vivo

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The 3' untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element

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Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs

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3' Terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA

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Mutational analysis of cis-acting sequences in the 3'- and 5'-untranslated regions of RNA2 of red clover necrotic mosaic virus

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Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

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Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection

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Multiplication of beet necrotic yellow vein virus RNA 3 lacking a 3' poly(A) tail is accompanied by reappearance of the poly(A) tail and a novel short U-rich tract preceding it.

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Conformation of the 3'-end of beet necrotic yellow vein benevirus RNA 3 analysed by chemical and enzymatic probing and mutagenesis

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Restoration of the 3' end of potyvirus RNA derived from Poly(A)-deficient infectious cDNA clones

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Analysis of sequences involved in cowpea mosaic virus RNA replication using site-specific mutants

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Specificity analysis of the conserved hexanucleotides for the replication of bamboo mosaic potexvirus RNA.

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Structural and functional analysis of the 3' untranslated region of bamboo mosaic potexvirus genomic RNA.

1 reference

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Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA.

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Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs

1 reference

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Influence of the poly(A) tail and putative polyadenylation signal on the infectivity of white clover mosaic potexvirus

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The Complete Nucleotide Sequence of Potato Virus X and Its Homologies at the Amino Acid Level with Various Plus-stranded RNA Viruses

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The nucleotide sequence of potato virus X RNA.

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Cell-to-cell movement of potato virus X is associated with a change in the size-exclusion limit of plasmodesmata in trichome cells of Nicotiana clevelandii

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Cell-to-cell movement of Potato virus X: the role of p12 and p8 encoded by the second and third open reading frames of the triple gene block

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Cell-to-cell and phloem-mediated transport of potato virus X. The role of virions

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Assembly and movement of a plant virus carrying a green fluorescent protein overcoat

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Jellyfish green fluorescent protein as a reporter for virus infections

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Stem-loop structure in the 5' region of potato virus X genome required for plus-strand RNA accumulation

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Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation

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The entire nucleotide sequence of foxtail mosaic virus RNA

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Sequences at the 3' untranslated region of bamboo mosaic potexvirus RNA interact with the viral RNA-dependent RNA polymerase

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Full-length tobacco mosaic virus RNAs and defective RNAs have different 3' replication signals

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Turnip yellow mosaic virus RNA-dependent RNA polymerase: initiation of minus strand synthesis in vitro

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Plant mRNA 3'-end formation

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A phylogenetically conserved sequence within viral 3' untranslated RNA pseudoknots regulates translation

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Identification of a competitive translation determinant in the 3' untranslated region of alfalfa mosaic virus coat protein mRNA.

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A potential mechanism for selective control of cap-independent translation by a viral RNA sequence in cis and in trans

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Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region

1 reference

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Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA.

1 reference

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Translation of a nonpolyadenylated viral RNA is enhanced by binding of viral coat protein or polyadenylation of the RNA

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Characterization of infectious transcripts from a potato virus X cDNA clone

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Rapid and efficient site-specific mutagenesis without phenotypic selection

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The computer simulation of RNA folding involving pseudoknot formation

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Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus

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The turnip yellow mosaic virus tRNA-like structure cannot be replaced by generic tRNA-like elements or by heterologous 3' untranslated regions known to enhance mRNA expression and stability.

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Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: implications for the role of minus-strand RNA in RNA replication and transcription

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An eight-nucleotide sequence in the potato virus X 3' untranslated region is required for both host protein binding and viral multiplication

1 reference

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1 reference

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1 reference

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10.1016/S0022-2836(02)01369-4

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24 November 2022

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