Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots (Q28078834)

Crossref

Joseph X Zhou

series ordinal

2

1 reference

Crossref

Sui Huang

series ordinal

3

1 reference

Crossref

language of work or name

1 reference

June 2016

1 reference

Current Opinion in Biotechnology

published in

1 reference

volume

39

1 reference

page(s)

207-14

1 reference

Defining cell types and states with single-cell genomics

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Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle

20 March 2017

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20 March 2017

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Metabolic stability and epigenesis in randomly constructed genetic nets

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Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

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Nanog safeguards pluripotency and mediates germline development

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Localization of ASH1 mRNA particles in living yeast

7 April 2017

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destiny: diffusion maps for large-scale single-cell data in R.

7 April 2017

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ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis

29 September 2017

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Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state

29 September 2017

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Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments

29 September 2017

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Single-cell messenger RNA sequencing reveals rare intestinal cell types

29 September 2017

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Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis

29 September 2017

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Single-cell chromatin accessibility reveals principles of regulatory variation

29 September 2017

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Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

29 September 2017

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Diffusion maps for high-dimensional single-cell analysis of differentiation data.

29 September 2017

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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

29 September 2017

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Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

29 September 2017

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Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing

29 September 2017

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RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells

29 September 2017

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Early reprogramming regulators identified by prospective isolation and mass cytometry

29 September 2017

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A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry

29 September 2017

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Decoding the regulatory network of early blood development from single-cell gene expression measurements.

29 September 2017

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Computational and analytical challenges in single-cell transcriptomics

29 September 2017

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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

29 September 2017

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Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape

29 September 2017

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Computational and experimental single cell biology techniques for the definition of cell type heterogeneity, interplay and intracellular dynamics

29 September 2017

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Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells

29 September 2017

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flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.

29 September 2017

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Systems biology. Conditional density-based analysis of T cell signaling in single-cell data

29 September 2017

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Single-cell technologies sharpen up mammalian stem cell research

29 September 2017

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Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

29 September 2017

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Dynamic heterogeneity and DNA methylation in embryonic stem cells

29 September 2017

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Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

29 September 2017

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Automated identification of stratifying signatures in cellular subpopulations

29 September 2017

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

29 September 2017

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Every cell is special: genome-wide studies add a new dimension to single-cell biology

29 September 2017

1 reference

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Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data

29 September 2017

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Entering the era of single-cell transcriptomics in biology and medicine

29 September 2017

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Quantitative single-cell RNA-seq with unique molecular identifiers

29 September 2017

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Probing cellular processes by long-term live imaging--historic problems and current solutions

29 September 2017

1 reference

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Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model

29 September 2017

1 reference

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Cooperativity in cellular biochemical processes: noise-enhanced sensitivity, fluctuating enzyme, bistability with nonlinear feedback, and other mechanisms for sigmoidal responses

29 September 2017

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Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

29 September 2017

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Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways

29 September 2017

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Quantifying the Waddington landscape and biological paths for development and differentiation

29 September 2017

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Predicting pancreas cell fate decisions and reprogramming with a hierarchical multi-attractor model

29 September 2017

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The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation

29 September 2017

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Cell lineage determination in state space: a systems view brings flexibility to dogmatic canonical rules

29 September 2017

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Non-genetic heterogeneity of cells in development: more than just noise

29 September 2017

1 reference

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Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

29 September 2017

1 reference

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Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

29 September 2017

1 reference

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Deconstructing transcriptional heterogeneity in pluripotent stem cells

2 June 2018

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Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

2 June 2018

1 reference

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Single-cell in situ RNA profiling by sequential hybridization

2 June 2018

1 reference

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

2 June 2018

1 reference

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A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst

2 June 2018

1 reference

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Quasi-potential landscape in complex multi-stable systems

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334

Network plasticity of pluripotency transcription factors in embryonic stem cells.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334

The molecular and mathematical basis of Waddington's epigenetic landscape: a framework for post-Darwinian biology?

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334

Cell Fate Decision as High-Dimensional Critical State Transition

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/27152696

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.COPBIO.2016.04.015

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka

30 July 2022

release_t42ogiu7v5eq3frrlb7bzi3hka

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Fatcat

https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka

30 July 2022

https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka

1 reference

30 July 2022