Progress, pitfalls and parallel universes: a history of insect phylogenetics (Q28072935)

Margarita Yavorskaya

series ordinal

3

1 reference

Rolf G. Beutel

series ordinal

4

1 reference

language of work or name

1 reference

August 2016

1 reference

Journal of the Royal Society Interface

published in

1 reference

volume

13

1 reference

page(s)

20160363

0 references

issue

121

1 reference

Elusive ditrysian phylogeny: an account of combining systematized morphology with molecular data (Lepidoptera)

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A molecular phylogeny of Hemiptera inferred from mitochondrial genome sequences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The multipartite mitochondrial genome of Liposcelis bostrychophila: insights into the evolution of mitochondrial genomes in bilateral animals

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Alexandr Pavlovich Rasnitsyn, (palaeo)entomologist extraordinaire - a personal appreciation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Episodic radiations in the fly tree of life

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of Strepsiptera

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A proteomic approach for studying insect phylogeny: CAPA peptides of ancient insect taxa (Dictyoptera, Blattoptera) as a test case

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Death of an order: a comprehensive molecular phylogenetic study confirms that termites are eusocial cockroaches

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Multigene phylogeny reveals eusociality evolved twice in vespid wasps

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Genome-wide acceleration of protein evolution in flies (Diptera).

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Synergistic effects of combining morphological and molecular data in resolving the phylogeny of butterflies and skippers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Multiple origins of parasitism in lice

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha)

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The colonization of land by animals: molecular phylogeny and divergence times among arthropods

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

MRBAYES: Bayesian inference of phylogenetic trees

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

MODELTEST: testing the model of DNA substitution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The neighbor-joining method: a new method for reconstructing phylogenetic trees

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

20 March 2017

Origin of the Metazoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Evidence from multiple gene sequences indicates that termites evolved from wood-feeding cockroaches

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogeny of Dictyoptera: Dating the Origin of Cockroaches, Praying Mantises and Termites with Molecular Data and Controlled Fossil Evidence

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenomics resolves evolutionary relationships among ants, bees, and wasps

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The rapid divergence of the ecdysone receptor is a synapomorphy for Mecopterida that clarifies the Strepsiptera problem

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A Contribution to the Understanding of Cockroach-Termite Affinities1

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenies from molecular sequences: inference and reliability

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Evolutionary dynamics of the mitochondrial genome in the evaniomorpha (hymenoptera)—a group with an intermediate rate of gene rearrangement

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenomics provides strong evidence for relationships of butterflies and moths

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Mitochondrial genome of the stonefly Kamimuria wangi (Plecoptera: Perlidae) and phylogenetic position of plecoptera based on mitogenomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Comparative analysis of mitochondrial genomes in Diplura (hexapoda, arthropoda): taxon sampling is crucial for phylogenetic inferences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular phylogenetic analyses support the monophyly of Hexapoda and suggest the paraphyly of Entognatha

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Complete mitochondrial genome of the free-living earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and phylogeny of Polyneoptera

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Isolation of Hox cluster genes from insects reveals an accelerated sequence evolution rate

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Fossil gaps inferred from phylogenies alter the apparent nature of diversification in dragonflies and their relatives

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The first molecular phylogeny of Strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The brain of the Remipedia (Crustacea) and an alternative hypothesis on their phylogenetic relationships

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenomics resolves the timing and pattern of insect evolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means of Selection

6 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

22 April 2017

Long-Branch Abstractions

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Confidence Limits on Phylogenies: an Approach using the Bootstrap

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Model Selection in Phylogenetics

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Mecoptera is paraphyletic: multiple genes and phylogeny of Mecoptera and Siphonaptera

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Combined molecular and morphological evidence on the phylogeny of the earliest lepidopteran lineages

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

[21] Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction

22 April 2017

1 reference

https://api.crossref.org/works/10.1098/RSIF.2016.0363

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Among-site rate variation and its impact on phylogenetic analyses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Caloramator viterbensis sp. nov., a novel thermophilic, glycerol-fermenting bacterium isolated from a hot spring in Italy

7 April 2017

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Joint Bayesian Estimation of Alignment and Phylogeny

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis

24 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Fleas (Siphonaptera) are Cretaceous, and evolved with Theria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Strepsiptera, phylogenomics and the long branch attraction problem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Towards a mitogenomic phylogeny of Lepidoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Head morphology of Tricholepidion gertschi indicates monophyletic Zygentoma.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Insect mitochondrial genomics: implications for evolution and phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

When the body hides the ancestry: phylogeny of morphologically modified epizoic earwigs based on molecular evidence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A comparative analysis of complete mitochondrial genomes among Hexapoda.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A history of entomological classification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Relaxed phylogenetics and the palaeoptera problem: resolving deep ancestral splits in the insect phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Insect phylogenomics: exploring the source of incongruence using new transcriptomic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Anchored hybrid enrichment for massively high-throughput phylogenomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Butterfly morphology in a molecular age -- does it still matter in butterfly systematics?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Peptidomics-based phylogeny and biogeography of Mantophasmatodea (Hexapoda).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A phylogenomic approach to resolve the arthropod tree of life

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Recovering evolutionary trees under a more realistic model of sequence evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic approaches for the analysis of mitochondrial genome sequence data in the Hymenoptera--a lineage with both rapidly and slowly evolving mitochondrial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic relationships of basal hexapods reconstructed from nearly complete 18S and 28S rRNA gene sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The complete mitochondrial genome of Parafronurus youi (Insecta: Ephemeroptera) and phylogenetic position of the Ephemeroptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of lepidoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Ancient rapid radiations of insects: challenges for phylogenetic analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogeny of the higher Libelluloidea (Anisoptera: Odonata): an exploration of the most speciose superfamily of dragonflies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

On the Subdivision of the Genus Drosophila

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Mitochondrial genomics and the new insect order Mantophasmatodea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The utility of the incongruence length difference test.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Multiple molecular data sets suggest independent origins of highly eusocial behavior in bees (Hymenoptera:Apinae).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic congruence and discordance among one morphological and three molecular data sets from Pontederiaceae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Long-branch distraction and the Strepsiptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Arthropod phylogeny based on eight molecular loci and morphology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Hox genes and the phylogeny of the arthropods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Multiple sequence alignment in phylogenetic analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Nuclear genes resolve mesozoic-aged divergences in the insect order Lepidoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Accessory pulsatile organs: evolutionary innovations in insects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The current state of insect molecular systematics: a thriving Tower of Babel

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Hierarchical analysis of variation in the mitochondrial 16S rRNA gene among Hymenoptera

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular phylogenetics at the Felsenstein zone: approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The evolution of hexamerins and the phylogeny of insects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The effectiveness of mitochondrial rRNA gene sequences for the reconstruction of the phylogeny of an insect order (Orthoptera).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular phylogeny of the major arthropod groups indicates polyphyly of crustaceans and a new hypothesis for the origin of hexapods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Evolution of the mitochondrial cytochrome oxidase II gene in collembola

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A nuclear gene for higher level phylogenetics: phosphoenolpyruvate carboxykinase tracks mesozoic-age divergences within Lepidoptera (Insecta).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Database on the structure of small ribosomal subunit RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Systematics of holometabolous insect orders based on 18S ribosomal RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular phylogeny of the Homoptera: a paraphyletic taxon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A highly conserved nuclear gene for low-level phylogenetics: elongation factor-1 alpha recovers morphology-based tree for heliothine moths

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Primary and secondary structures of Tetrahymena and aphid 5.8S rRNAs: structural features of 5.8S rRNA which interacts with the 28S rRNA containing the hidden break.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular phylogeny of the animal kingdom

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The phylogenetic status of arthropods, as inferred from 18S rRNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Characterization of 67 mitochondrial tRNA gene rearrangements in the Hymenoptera suggests that mitochondrial tRNA gene position is selectively neutral.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The mitochondrial genome of the entomophagous endoparasite Xenos vesparum (Insecta: Strepsiptera).

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae).

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic mapping of intron positions: a case study of translation initiation factor eIF2gamma

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Sequence and phylogenetic analysis of the complete mitochondrial genome of the flour beetle Tribolium castanaeum

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogeny of Trichoptera (caddisflies): characterization of signal and noise within multiple datasets

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

A new nuclear gene for insect phylogenetics: dopa decarboxylase is informative of relationships within Heliothinae (Lepidoptera: Noctuidae).

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Phylogenetic utility of the nuclear gene dopa decarboxylase in noctuoid moths (Insecta: Lepidoptera: noctuoidea).

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Molecular evolution of the wingless gene and its implications for the phylogenetic placement of the butterfly family Riodinidae (Lepidoptera: papilionoidea).

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Intron insertion as a phylogenetic character: the engrailed homeobox of Strepsiptera does not indicate affinity with Diptera.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

18S rDNA sequences and the holometabolous insects

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Evolution of the mitochondrial cytochrome oxidase II gene among 10 orders of insects

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Charles Darwin, beetles and phylogenetics.

2 June 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

10th edition of Systema Naturae

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A Phylogenetic Study of the Terga and Wing Bases in Embiids, Plecoptera, Dermaptera, and Coleoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Portraits of science. From the modern synthesis to Lysenkoism, and back?

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Morphological and molecular evidence converge upon a robust phylogeny of the megadiverse Holometabola

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The phylogeny of hexapod “orders”. A critical review of recent accounts

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Phylogeny of Insect Orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

100 years Zoraptera—a phantom in insect evolution and the history of its investigation

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Ice Crawlers (Grylloblattodea) – the history of the investigation of a highly unusual group of insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The Phylogeny of the Extant Hexapod Orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Aligned 18S for Zoraptera (Insecta): phylogenetic position and molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Embryonic development of Zoraptera with special reference to external morphology, and its phylogenetic implications (Insecta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Zoraptera wing structures: evidence for new genera and relationship with the blattoid orders (Insecta: Blattoneoptera)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

New Carboniferous Diplura, Monura, and Thysanura, the hexapod ground plan, and the role of thoracic side lobes in the origin of wings (Insecta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Aligned 18S and insect phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Phylogenetic utility of the major opsin in bees (Hymenoptera: Apoidea): a reassessment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Review of the Order Strepsiptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Is the Felsenstein zone a fly trap?

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: calibration of the molecular clock.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Phylogeny of the holometabolous insect orders: molecular evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Increased congruence does not necessarily indicate increased phylogenetic accuracy--the behavior of the incongruence length difference test in mixed-model analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Mantophasmatodea and phylogeny of the lower neopterous insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Numerical Methods for Inferring Evolutionary Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A Stochastic Model for the Evolution of Autocorrelated DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Towards an 18S phylogeny of hexapods: accounting for group-specific character covariance in optimized mixed nucleotide/doublet models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The phylogenetic positions of three Basal-hexapod groups (protura, diplura, and collembola) based on ribosomal RNA gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Gene translocation links insects and crustaceans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera).

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The complete mitochondrial DNA sequence of the basal hexapod Tetrodontophora bielanensis: evidence for heteroplasmy and tRNA translocations

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Insect mitochondrial genomics: the complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchenorrhyncha: Cercopoidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato (Arthropoda)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The mitochondrial genome of Bacillus stick insects (Phasmatodea) and the phylogeny of orthopteroid insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A mitochondrial genome phylogeny of the Neuropterida (lace-wings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Phylogenetic analysis of higher-level relationships of Odonata

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

An updated phylogeny of Anisoptera including formal convergence analysis of morphological characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Redefining the damselfly families: a comprehensive molecular phylogeny of Zygoptera (Odonata)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Towards a new paradigm in mayfly phylogeny (Ephemeroptera): combined analysis of morphological and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A molecular phylogeny of Phasmatodea with emphasis on Necrosciinae, the most species-rich subfamily of stick insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Relationships among the major lineages of Dictyoptera: the effect of outgroup selection on dictyopteran tree topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Reconstructing the origins of praying mantises (Dictyoptera, Mantodea): the roles of Gondwanan vicariance and morphological convergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Combined molecular phylogenetic analysis of the Orthoptera (Arthropoda, Insecta) and implications for their higher systematics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Abundance, Recruitment, and Shell Growth of the Exotic Mussel Limnoperna fortunei in the Rio de la Plata (Argentina)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Higher-level phylogeny of the insect order Hemiptera: is Auchenorrhyncha really paraphyletic?

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Phylogenetic relationships among superfamilies of Hymenoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The Phylogeny and Evolution of Ants

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Time Flies, a New Molecular Time-Scale for Brachyceran Fly Evolution Without a Clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The evolutionary history of Trichoptera (Insecta): A case of successful adaptation to life in freshwater

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Molecular phylogeny of Panorpidae (Insecta: Mecoptera) based on mitochondrial and nuclear genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A molecular phylogeny of fleas (Insecta: Siphonaptera): origins and host associations

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A phylogenomic approach to resolve the basal pterygote divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Insect phylogenomics: new insights on the relationships of lower neopteran orders (Polyneoptera)

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Head structures of Priacma serrata Leconte (Coleptera, Archostemata) inferred from X-ray tomography

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Larval head morphology of Hydroscapha natans (Coleoptera, Myxophaga) with reference to miniaturization and the systematic position of Hydroscaphidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Morphology and insect systematics in the era of phylogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Identifying cliques of convergent characters: concerted evolution in the cormorants and shags

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The identification of concerted convergence in insect heads corroborates palaeoptera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Insect phylogenomics: results, problems and the impact of matrix composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The phylogenetic position of early hexapod lineages: morphological data contradict molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Elongation factor-2: a useful gene for arthropod phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Hennigian Phylogenetic Systematics and the ‘Groundplan’ vs. ‘Post-Groundplan’ Approaches: A Reply to Kukalová-Peck

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

On wings of lace: phylogeny and Bayesian divergence time estimates of Neuropterida (Insecta) based on morphological and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Arthropod Cladistics: Combined Analysis of Histone H3 and U2 snRNA Sequences and Morphology

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

PHYLOGENIES FROM RESTRICTION SITES: A MAXIMUM-LIKELIHOOD APPROACH.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Time flies, a new molecular time-scale for brachyceran fly evolution without a clock

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Invariable sites models and their use in phylogeny reconstruction.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5014063

Insect homeotic transformation

27 November 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Alignment and Topological Accuracy of the Direct Optimization approach via POY and Traditional Phylogenetics via ClustalW + PAUP*

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Molecules, morphology and fossils: a comprehensive approach to odonate phylogeny and the evolution of the odonate wing

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life-history evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The effect of topology on estimates of among-site rate variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

The Palaeoptera Problem: Basal Pterygote Phylogeny Inferred from 18S and 28S rDNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSIF.2016.0363

Noise and Incongruence: Interpreting Results of the Incongruence Length Difference Test

21 January 2018

1 reference

12 December 2020

When does the incongruence length difference test fail?

1 reference

12 December 2020

1 reference

12 December 2020

Phylogenetic comparison of local length plasticity of the small subunit of nuclear rDNAs among all Hexapoda orders and the impact of hyper-length-variation on alignment

1 reference

12 December 2020

The early embryonic development of the jumping bristletail Pedetontus unimaculatus machida (Hexapoda: Microcoryphia, Machilidae)

1 reference

12 December 2020

Gross and fine structure of the antennal circulatory organ in cockroaches (Blattodea, Insecta)

1 reference

12 December 2020

On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

1 reference

12 December 2020

Do long branches attract flies?

1 reference

12 December 2020

release_thppfj6kgfafljaz5iinkvp54m

Identifiers

DOI

10.1098/RSIF.2016.0363

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/thppfj6kgfafljaz5iinkvp54m

24 November 2022