A zipper-like duplex in DNA: the crystal structure of d(GCGAAAGCT) at 2.1 A resolution (Q27764890)

2

0 references

R Fourme

3

0 references

E de la Fortelle

4

0 references

T Prangé

Nucleotide sequences of the separate origins of synthesis of bacteriophage G4 viral and complementary DNA strands

5

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language of work or name

1 reference

15 July 1998

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published in

Structure

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volume

6

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issue

7

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page(s)

849-61

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cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Site-specific initiation of a DNA fragment: nucleotide sequence of the bacteriophage G4 negative-strand initiation site

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure of the 3′ hairpin termini of four rodent parvovirus genomes: Nucleotide sequence homology at origins of DNA replication

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Unique hairpin structures occurring at the replication origin of phage G4 DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Nuclease resistance of an extraordinarily thermostable mini-hairpin DNA fragment, d(GCGAAGC) and its application to in vitro protein synthesis.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Extraordinarily stable mini-hairpins: electrophoretical and thermal properties of the various sequence variants of d(GCGAAAGC) and their effect on DNA sequencing.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Extraordinary stable structure of short single-stranded DNA fragments containing a specific base sequence: d(GCGAAAGC).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A thermodynamic study of unusually stable RNA and DNA hairpins

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A network of heterogeneous hydrogen bonds in GNRA tetraloops

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Highly conserved repetitive DNA sequences are present at human centromeres

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Chromosome walking shows a highly homologous repetitive sequence present in all the centromere regions of fission yeast.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A novel sequence common to the centromere regions of Schizosaccharomyces pombe chromosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A human centromere antigen (CENP-B) interacts with a short specific sequence in alphoid DNA, a human centromeric satellite

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Partial deletion of alpha satellite DNA associated with reduced amounts of the centromere protein CENP-B in a mitotically stable human chromosome rearrangement

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Centromeres of mammalian chromosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Unusual structures of the tandem repetitive DNA sequences located at human centromeres

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The unusual structure of the human centromere (GGA)2 motif. Unpaired guanosine residues stacked between sheared G.A pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The structure of a novel DNA duplex formed by human centromere d(TGGAA) repeats with possible implications for chromosome attachment during mitosis

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

On the relative ability of centromeric GNA triplets to form hairpins versus self-paired duplexes

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A continuous transition from A-DNA to B-DNA in the 1:1 complex between nogalamycin and the hexamer dCCCGGG

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Sheared purine x purine pairing in biology

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Thermodynamics of DNA duplexes with adjacent G.cntdot.A mismatches

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A tetrameric DNA structure with protonated cytosine.cytosine base pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Formation of novel hairpin structures by telomeric C-strand oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Human telomeric C-strand tetraplexes

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Crystal structure of a four-stranded intercalated DNA: d(C4)

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Crystal structure of intercalated four-stranded d(C3T) at 1.4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Polycytosine regions contained in DNA hairpin loops interact via a four-stranded, parallel structure similar to the i-motif.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomere

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Extension of the four-stranded intercalated cytosine motif by adenine.adenine base pairing in the crystal structure of d(CCCAAT)

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure and conversion kinetics of a bi-stable DNA i-motif: broken symmetry in the [d(5mCCTCC)]4 tetramer

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Solution structure and base pair opening kinetics of the i-motif dimer of d(5mCCTTTACC): a noncanonical structure with possible roles in chromosome stability

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Molecular structure of cyclic deoxydiadenylic acid at atomic resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Molecular structure of cyclic diguanylic acid at 1 A resolution of two crystal forms: self-association, interactions with metal ion/planar dyes and modeling studies

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Duplex-hairpin transitions in DNA: NMR studies on CGCGTATACGCG.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Influence of N6-methylation of residue A(5) on the conformational behaviour of d(C-C-G-A-A-T-T-C-G-G) in solution studied by 1H-NMR spectroscopy. 2. The hairpin form

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Conformational transitions of synthetic DNA sequences with inserted bases, related to the dodecamer d(CGCGAATTCGCG).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A comparison of the hairpin stability of the palindromic d(CGCG(A/T)4CGCG) oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The solution structure of a DNA hairpin containing a loop of three thymidines determined by nuclear magnetic resonance and molecular mechanics

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Nuclear magnetic resonance and circular dichroism studies of a duplex--single-stranded hairpin loop equilibrium for the oligodeoxyribonucleotide sequence d(CGCGATTCGCG).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Stability and motion of a hairpin and the corresponding mismatched duplex: a theoretical exploration using molecular mechanics and normal mode analysis of 2D NMR results on d(GCCGCAGC)

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Energetics of the hairpin to mismatched duplex transition of d(GCCGCAGC) on NaCl solution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Solution structures of the individual single strands of the fragile X DNA triplets (GCC)n.(GGC)n

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Cystosine-rich strands of the insulin minisatellite adopt hairpins with intercalated cytosine+.cytosine pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structural Polymorphism and Dynamism in the DNA Segment GATCTTCCCCCCGGAA: NMR Investigations of Hairpin, Dumbbell, Nicked Duplex, Parallel Strands, and i-Motif

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

GNA trinucleotide loop sequences producing extraordinarily stable DNA minihairpins

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

DNA hairpin structures in solution: 500-MHz two-dimensional 1H NMR studies on d(CGCCGCAGC) and d(CGCCGTAGC)

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Metal-binding sites in the major groove of a large ribozyme domain

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The high resolution crystal structure of the DNA decamer d(AGGCATGCCT)

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structural basis for stabilization of Z-DNA by cobalt hexaammine and magnesium cations

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Crystal structure of d(GCGCGCG) with 5'-overhang G residues

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The interactions of ruthenium hexaammine with Z-DNA: crystal structure of a Ru(NH3)6+3 salt of d(CGCGCG) at 1.2 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Bridged cobalt amine complexes induce DNA conformational changes effectively

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Neomycin, spermine and hexaamminecobalt (III) share common structural motifs in converting B- to A-DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Induction of B-A transitions of deoxyoligonucleotides by multivalent cations in dilute aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The role of metal ions in the conformation of the four-way DNA junction.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A magnesium ion core at the heart of a ribozyme domain

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

RNA tertiary structure mediation by adenosine platforms

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

DNA sequences and structural homologies of the replication origins of lambdoid bacteriophages

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Physical structure of the replication origin of bacteriophage lambda

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Nucleotide sequence of the origin of replication of the Escherichia coli K-12 chromosome

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Nucleotide sequence of Escherichia coli K-12 replication origin

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Initiation of DNA replication at palindromic telomeres is mediated by a duplex-to-hairpin transition induced by the minute virus of mice nonstructural protein NS1.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Rolling hairpin model for replication of parvovirus and linear chromosomal DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Structure and assembly of filamentous bacterial viruses

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A proposal for a specific double-helical structure in which the polynucleotide strands intercalate instead of forming base-pairs

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The chromatin structure of centromeres from fission yeast: differentiation of the central core that correlates with function

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A low copy number central sequence with strict symmetry and unusual chromatin structure in fission yeast centromere

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Centromere protein B assembles human centromeric alpha-satellite DNA at the 17-bp sequence, CENP-B box

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

A human centromere protein, CENP-B, has a DNA binding domain containing four potential alpha helices at the NH2 terminus, which is separable from dimerizing activity

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

CENP-B: a major human centromere protein located beneath the kinetochore

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Centromeric dodeca-satellite DNA sequences form fold-back structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

The CCP4 suite: programs for protein crystallography

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

MAD Phasing Strategies Explored with a Brominated Oligonucleotide Crystal at 1.65A Resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Application of the anomalous dispersion of X-rays to macromolecular crystallography

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Determination of macromolecular structures from anomalous diffraction of synchrotron radiation

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021

Methods used in the structure determination of bovine mitochondrial F1 ATPase

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2898%2900087-2

7 January 2021