Computational prediction of type III and IV secreted effectors in gram-negative bacteria (Q27692827)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20974833%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

title

Computational prediction of type III and IV secreted effectors in gram-negative bacteria (English)

2 references

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14 January 2020

main subject

Gram-negative bacteria

0 references

author

Jason McDermott

1

1 reference

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14 January 2020

Eric D Cambronne

6

1 reference

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14 January 2020

author name string

Abigail Corrigan

2

1 reference

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14 January 2020

Elena Peterson

3

1 reference

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14 January 2020

Christopher Oehmen

4

1 reference

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14 January 2020

George Niemann

5

1 reference

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14 January 2020

Danna Sharp

7

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14 January 2020

Joshua N Adkins

8

1 reference

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14 January 2020

Ram Samudrala

9

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14 January 2020

Fred Heffron

10

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14 January 2020

language of work or name

English

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publication date

25 October 2010

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14 January 2020

published in

Infection and Immunity

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14 January 2020

volume

79

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14 January 2020

issue

1

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14 January 2020

page(s)

23-32

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Sequence-based prediction of type III secreted proteins

14 January 2020

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Substrate recognition of type III secretion machines--testing the RNA signal hypothesis.

29 September 2017

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Structural characterization of the molecular platform for type III secretion system assembly.

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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A synonymous mutation in Yersinia enterocolitica yopE affects the function of the YopE type III secretion signal

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Crystal structure of the type III effector AvrB from Pseudomonas syringae

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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A Burkholderia pseudomallei type III secreted protein, BopE, facilitates bacterial invasion of epithelial cells and exhibits guanine nucleotide exchange factor activity

29 September 2017

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29 September 2017

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29 September 2017

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A bacterial guanine nucleotide exchange factor activates ARF on Legionella phagosomes

29 September 2017

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The carboxy-terminus of VirE2 from Agrobacterium tumefaciens is required for its transport to host cells by the virB-encoded type IV transport system

29 September 2017

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Molecular characterization and assembly of the needle complex of the Salmonella typhimurium type III protein secretion system

29 September 2017

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29 September 2017

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Type III secretion machines: bacterial devices for protein delivery into host cells

29 September 2017

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Identification of the YopE and YopH domains required for secretion and internalization into the cytosol of macrophages, using the cyaA gene fusion approach

29 September 2017

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Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation

29 September 2017

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Functional conservation among members of the Salmonella typhimurium InvA family of proteins

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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2 June 2018

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Type III secretion of the Salmonella effector protein SopE is mediated via an N-terminal amino acid signal and not an mRNA sequence

2 June 2018

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Definition of a bacterial type IV secretion pathway for a DNA substrate

2 June 2018

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2 June 2018

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2 June 2018

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2 June 2018

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A mRNA signal for the type III secretion of Yop proteins by Yersinia enterocolitica

2 June 2018

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2 June 2018

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Analysis of functional domains present in the N-terminus of the SipB protein.

27 November 2018

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POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.

27 November 2018

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Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.

27 November 2018

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A common structural motif in the binding of virulence factors to bacterial secretion chaperones.

27 November 2018

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A C-terminal translocation signal is necessary, but not sufficient for type IV secretion of the Helicobacter pylori CagA protein.

27 November 2018

1 reference

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SVM-BALSA: remote homology detection based on Bayesian sequence alignment.

27 November 2018

1 reference

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A genome-wide screen identifies a Bordetella type III secretion effector and candidate effectors in other species.

27 November 2018

1 reference

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A support vector machine approach to the identification of phosphorylation sites

27 November 2018

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The Legionella IcmS-IcmW protein complex is important for Dot/Icm-mediated protein translocation.

27 November 2018

1 reference

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The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019878

Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019878

VirB/D4-dependent protein translocation from Agrobacterium into plant cells

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20974833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/IAI.00537-10

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20974833%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20974833%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

2 references