A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution (Q27680922)

2

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Lei Jin

3

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Elizabeth Czornyj

4

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Asher Hodes

5

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Wong H Hui

6

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Angela W Nieh

7

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Jeff F Miller

8

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Z Hong Zhou

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling

9

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language of work or name

English

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publication date

17 December 2013

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1 reference

2

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page(s)

e01299

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cites work

1 reference

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Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks

20 March 2017

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3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry

20 March 2017

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Subunit interactions in bovine papillomavirus

20 March 2017

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

20 March 2017

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Structural basis of enzyme encapsulation into a bacterial nanocompartment

20 March 2017

1 reference

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The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses

20 March 2017

1 reference

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Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes

20 March 2017

1 reference

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Structure of the reovirus membrane-penetration protein, Mu1, in a complex with is protector protein, Sigma3

20 March 2017

1 reference

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Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion

20 March 2017

1 reference

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The atomic structure of the bluetongue virus core

20 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 March 2017

1 reference

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Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications

20 March 2017

1 reference

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Coot: model-building tools for molecular graphics

20 March 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

20 March 2017

1 reference

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Accurate determination of local defocus and specimen tilt in electron microscopy

20 March 2017

1 reference

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Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

20 March 2017

1 reference

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Structure of a human common cold virus and functional relationship to other picornaviruses

20 March 2017

1 reference

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Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

20 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

7 April 2017

https://api.crossref.org/works/10.7554%2FELIFE.01299

Topologically linked protein rings in the bacteriophage HK97 capsid

22 April 2017

1 reference

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FREALIGN: high-resolution refinement of single particle structures

7 April 2017

1 reference

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Atomic Structure of Bordetella Bacteriophage Reveals a Jellyroll Fold in CementProtein and a Topologically Distinct HK97-like Fold in Major Capsid Protein

24 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Structure unifies the viral universe

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly

29 September 2017

1 reference

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Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

29 September 2017

1 reference

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Critical salt bridges guide capsid assembly, stability, and maturation behavior in bacteriophage HK97

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Three-dimensional structure of tropism-switching Bordetella bacteriophage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Tomato bushy stunt virus at 2.9 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Duplication, divergence and formation of novel protein topologies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

What does structure tell us about virus evolution?

29 September 2017

1 reference

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Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Three-dimensional structure of poliovirus at 2.9 A resolution.

29 September 2017

1 reference

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Icosahedral RNA virus structure

29 September 2017

1 reference

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Anatomy and evolution of proteins displaying the viral capsid jellyroll topology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Diversity-generating retroelement homing regenerates target sequences for repeated rounds of codon rewriting and protein diversification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

The structure of the human adenovirus 2 penton

2 June 2018

1 reference

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The three-dimensional structure of the bacterial virus MS2.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Insights into assembly from structural analysis of bacteriophage PRD1.

2 June 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.01299

Protein chainmail: catenated protein in viral capsids

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.01299

Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.01299

Tomato bushy stunt virus at 2.9 Å resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.01299

Structure of southern bean mosaic virus at 2.8 A resolution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3863775

Structure of southern bean mosaic virus at 2.8 Å resolution

27 November 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.01299

Packaging of coliphage lambda DNA. II. The role of the gene D protein

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24347545