DNA stretching by bacterial initiators promotes replication origin opening (Q27674672)

ORCID Public Data File 2021

James M. Berger

series ordinal

3

object named as

James M Berger

0 references

author name string

Kevin Chuang

series ordinal

2

0 references

language of work or name

English

0 references

publication date

2 October 2011

0 references

published in

Nature

0 references

volume

478

0 references

page(s)

209-13

0 references

issue

7368

0 references

cites work

Running in Reverse: The Structural Basis for Translocation Polarity in Hexameric Helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

The Mechanism of ATP-Dependent Primer-Template Recognition by a Clamp Loader Complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Structural Synergy and Molecular Crosstalk between Bacterial Helicase Loaders and Replication Initiators

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Structural basis of DNA replication origin recognition by an ORC protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

An extended DNA structure through deoxyribose-base stacking induced by RecA protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

The structure of the E. coli recA protein monomer and polymer

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

AAA+ superfamily ATPases: common structure--diverse function

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Initiation of genetic recombination and recombination-dependent replication

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Origin recognition and the chromosome cycle

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Evolutionary history and higher order classification of AAA+ ATPases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Regulating DnaA complex assembly: it is time to fill the gaps.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Motoring along with the bacterial RecA protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Direct observation of individual RecA filaments assembling on single DNA molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Real-time observation of RecA filament dynamics with single monomer resolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Mechanism of DNA translocation in a replicative hexameric helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

DnaA: controlling the initiation of bacterial DNA replication and more

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Crystal structure of a Rad51 filament

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Evolution and classification of P-loop kinases and related proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

ATPase switches controlling DNA replication initiation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

A common structural core in proteins active in DNA recombination and replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

The helicity of DNA in complexes with recA protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Adjacent residues in the E1 initiator beta-hairpin define different roles of the beta-hairpin in Ori melting, helicase loading, and helicase activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

E. coli recA protein possesses a strand separating activity on short duplex DNAs

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192921

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

19 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Suite of three protein crystallography beamlines with single superconducting bend magnet as the source.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

PHENIX: building new software for automated crystallographic structure determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Maximum-likelihood density modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Coot: model-building tools for molecular graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Cyanine dye labeling reagents: sulfoindocyanine succinimidyl esters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: improved absolute standards for quantum yields

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Fluorescence resonance energy transfer and nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

21 January 2018

Chemistry and biology

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Alteration of Escherichia coli topoisomerase IV conformation upon enzyme binding to positively supercoiled DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E. coli chromosomal origin

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21964332

12 December 2020

inferred from PubMed ID database lookup

AAA+ ATPases in the initiation of DNA replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21964332

12 December 2020

inferred from PubMed ID database lookup

Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21964332

12 December 2020

inferred from PubMed ID database lookup

X-ray-induced debromination of nucleic acids at the Br K absorption edge and implications for MAD phasing

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

7 January 2021

inferred from DOI database lookup

Principles of Fluorescence Spectroscopy

1 reference

https://api.crossref.org/works/10.1038%2FNATURE10455

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE10455

1 reference

Dimensions Publication ID

1164245

1021183882

0 references

1164245

1 reference

1 reference

1 reference