Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC (Q27666562)

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English	Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC	scientific article

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scholarly article

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Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC (English)

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viral nucleocapsid

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based on heuristic

inferred from title

Christian Boudier

object named as

Christian Boudier

4

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author name string

Ali Bazzi

1

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Loussiné Zargarian

2

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Françoise Chaminade

3

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Hughes De Rocquigny

5

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Brigitte René

6

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Yves Mély

7

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Philippe Fossé

8

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Olivier Mauffret

9

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language of work or name

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publication date

May 2011

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Nucleic Acids Research

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39

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9

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3903-16

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copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3089453/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Architecture and secondary structure of an entire HIV-1 RNA genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

20 March 2017

How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription

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20 March 2017

Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably?

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20 March 2017

BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure

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20 March 2017

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

20 March 2017

Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

20 March 2017

Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

20 March 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

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20 March 2017

Nucleic acid recognition by OB-fold proteins

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20 March 2017

Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR

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20 March 2017

Sequences in the 5' and 3' R elements of human immunodeficiency virus type 1 critical for efficient reverse transcription

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20 March 2017

The remarkable frequency of human immunodeficiency virus type 1 genetic recombination

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29 September 2017

Mechanism analysis indicates that recombination events in HIV-1 initiate and complete over short distances, explaining why recombination frequencies are similar in different sections of the genome

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29 September 2017

Site-specific characterization of HIV-1 nucleocapsid protein binding to oligonucleotides with two binding sites

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Role of RNA chaperones in virus replication.

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29 September 2017

Strand transfer events during HIV-1 reverse transcription

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Nucleocapsid protein function in early infection processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Properties, functions, and drug targeting of the multifunctional nucleocapsid protein of the human immunodeficiency virus.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Probing nucleation, reverse annealing, and chaperone function along the reaction path of HIV-1 single-strand transfer

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29 September 2017

Insights on the role of nucleic acid/protein interactions in chaperoned nucleic acid rearrangements of HIV-1 reverse transcription

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

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29 September 2017

Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

How retroviruses select their genomes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Dimerization of retroviral RNA genomes: an inseparable pair.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Protein-DNA hydrophobic recognition in the minor groove is facilitated by sugar switching

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

AANT: the Amino Acid-Nucleotide Interaction Database

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Specific zinc-finger architecture required for HIV-1 nucleocapsid protein's nucleic acid chaperone function

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

The HIV-1 repeated sequence R as a robust hot-spot for copy-choice recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Structural features in the HIV-1 repeat region facilitate strand transfer during reverse transcription

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Most retroviral recombinations occur during minus-strand DNA synthesis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

29 September 2017

Structural and dynamic characterization of the upper part of the HIV-1 cTAR DNA hairpin

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

2 June 2018

HIV-1 nucleocapsid protein switches the pathway of transactivation response element RNA/DNA annealing from loop-loop "kissing" to "zipper".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

2 June 2018

Potential intra- and intermolecular interactions involving the unique-5' region of the HIV-1 5'-UTR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

2 June 2018

Probing dynamics of HIV-1 nucleocapsid protein/target hexanucleotide complexes by 2-aminopurine

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2 June 2018

Specific interactions between HIV-1 nucleocapsid protein and the TAR element

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https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Role of the structure of the top half of HIV-1 cTAR DNA on the nucleic acid destabilizing activity of the nucleocapsid protein NCp7.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

During the early phase of HIV-1 DNA synthesis, nucleocapsid protein directs hybridization of the TAR complementary sequences via the ends of their double-stranded stem.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Effect of Mg(2+) and Na(+) on the nucleic acid chaperone activity of HIV-1 nucleocapsid protein: implications for reverse transcription

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

An exact mathematical expression for describing competitive binding of two different ligands to a protein molecule.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Molecular dynamics and DFT study on HIV-1 nucleocapsid protein-7 in complex with viral genome.

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https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Statistical analysis of atomic contacts at RNA-protein interfaces

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https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1290

21 January 2018

Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: an electron microscopy investigation

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27 November 2018

Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089453

27 November 2018

Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis

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https://pubmed.ncbi.nlm.nih.gov/21227929

12 December 2020

based on heuristic

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Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/21227929

12 December 2020

based on heuristic

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Transmission electron microscopy reveals an optimal HIV-1 nucleocapsid aggregation with single-stranded nucleic acids and the mature HIV-1 nucleocapsid protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/21227929

12 December 2020

based on heuristic

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Evidence for a mechanism of recombination during reverse transcription dependent on the structure of the acceptor RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21227929

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/NAR/GKQ1290

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