The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs (Q27654467)

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English	The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs	scientific article

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scholarly article

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The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs (English)

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author name string

Yann Bilbille

1

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Franck A P Vendeix

2

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Richard Guenther

3

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Andrzej Malkiewicz

4

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Xavier Ariza

5

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Jaume Vilarrasa

6

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Paul F Agris

7

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language of work or name

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publication date

June 2009

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Nucleic Acids Research

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37

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10

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3342-53

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NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA

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A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture

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Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A

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Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches

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20 March 2017

HIV-1 A-rich RNA loop mimics the tRNA anticodon structure

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The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites

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Structure of an RNA double helix including uracil-uracil base pairs in an internal loop

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20 March 2017

Initiation of HIV-1 reverse transcription is regulated by a primer activation signal

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Primer tRNAs for reverse transcription

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20 March 2017

HIV-1 reverse transcription initiation: a potential target for novel antivirals?

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29 September 2017

Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

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29 September 2017

Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs.

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29 September 2017

Decoding the genome: a modified view

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29 September 2017

The annealing mechanism of HIV-1 reverse transcription primer onto the viral genome

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29 September 2017

Effect of altering the tRNA(Lys)(3) concentration in human immunodeficiency virus type 1 upon its annealing to viral RNA, GagPol incorporation, and viral infectivity

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29 September 2017

Destabilization of tRNA3(Lys) from the primer-binding site of HIV-1 genome by anti-A loop polyamide nucleotide analog

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29 September 2017

Resonance assignment and structure determination for RNA.

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29 September 2017

NMR and biochemical characterization of recombinant human tRNA(Lys)3 expressed in Escherichia coli: identification of posttranscriptional nucleotide modifications required for efficient initiation of HIV-1 reverse transcription

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29 September 2017

Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron.

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29 September 2017

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39

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29 September 2017

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

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29 September 2017

The RNA Modification Database: 1999 update

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29 September 2017

Mutational analysis of the tRNA3Lys/HIV-1 RNA (primer/template) complex.

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29 September 2017

Placement of tRNA primer on the primer-binding site requires pol gene expression in avian but not murine retroviruses

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29 September 2017

Nucleotide substitutions within U5 are critical for efficient reverse transcription of human immunodeficiency virus type 1 with a primer binding site complementary to tRNA(His)

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29 September 2017

The importance of the A-rich loop in human immunodeficiency virus type 1 reverse transcription and infectivity.

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29 September 2017

Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability

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29 September 2017

Identification of a sequence within U5 required for human immunodeficiency virus type 1 to stably maintain a primer binding site complementary to tRNA(Met).

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29 September 2017

Mutations in both the U5 region and the primer-binding site influence the selection of the tRNA used for the initiation of HIV-1 reverse transcription

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29 September 2017

Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys

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29 September 2017

Psoralen crosslinking between human immunodeficiency virus type 1 RNA and primer tRNA3(Lys)

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29 September 2017

Stabilization of RNA stacking by pseudouridine

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29 September 2017

Construction of a type 1 human immunodeficiency virus that maintains a primer binding site complementary to tRNA(His).

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29 September 2017

DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein

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29 September 2017

Structural requirements for the binding of tRNA Lys3 to reverse transcriptase of the human immunodeficiency virus type 1.

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29 September 2017

A specific orientation of RNA secondary structures is required for initiation of reverse transcription.

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29 September 2017

Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription

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29 September 2017

Nuclear Overhauser effect study of yeast tRNAVal 1: evidence for uridine-pseudouridine base pairing

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29 September 2017

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

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29 September 2017

15N-labeled Escherichia coli tRNAfMet, tRNAGlu, tRNATyr, and tRNAPhe. Double resonance and two-dimensional NMR of N1-labeled pseudouridine.

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29 September 2017

NMR and molecular modeling evidence for a G.A mismatch base pair in a purine-rich DNA duplex

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29 September 2017

Nucleotide sequences within the U5 region of the viral RNA genome are the major determinants for an human immunodeficiency virus type 1 to maintain a primer binding site complementary to tRNA(His).

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Retroviral nucleocapsid proteins possess potent nucleic acid strand renaturation activity.

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2 June 2018

Recombinant human immunodeficiency virus type 1 nucleocapsid (NCp7) protein unwinds tRNA

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2 June 2018

The role of 5-methylcytidine in the anticodon arm of yeast tRNA(Phe): site-specific Mg2+ binding and coupled conformational transition in DNA analogs

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2 June 2018

A magnesium-induced conformational transition in the loop of a DNA analog of the yeast tRNA(Phe) anticodon is dependent on RNA-like modifications of the bases of the stem

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2 June 2018

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27 November 2018

An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications

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27 November 2018

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27 November 2018

Heteronuclear NMR studies of the interaction of tRNA3Lys with HIV-1 nucleocapsid protein11Edited by M. F. Summers

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Single atom modification (O-->S) of tRNA confers ribosome binding.

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Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation.

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Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry.

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Purification of transfer RNA species by single-step ion-exchange high-performance liquid chromatography

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12 December 2020

based on heuristic

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Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

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Base pairing within the psi32,psi39-modified anticodon arm of Escherichia coli tRNA(Phe)

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Three-dimensional heteronuclear NMR studies of RNA

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer)

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of a GA mismatch DNA sequence, d(CCATGAATGG)2, determined by 2D NMR and structural refinement methods

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides

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https://pubmed.ncbi.nlm.nih.gov/19324888

12 December 2020

based on heuristic

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High-yielding preparation of

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https://pubmed.ncbi.nlm.nih.gov/19324888

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based on heuristic

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Identifiers

10.1093/NAR/GKP187

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Consolidated OpenCitations Corpus – April 2017

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1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

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