The Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change (Q27651104)

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English	The Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change	scientific article

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The Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change (English)

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Joseph A. Beavo

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object named as

Joseph A Beavo

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author name string

Sergio E Martinez

1

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Clemens C Heikaus

2

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Rachel E Klevit

3

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language of work or name

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publication date

19 September 2008

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Journal of Biological Chemistry

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283

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38

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25913-9

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Solution Structure of the cGMP Binding GAF Domain from Phosphodiesterase 5: INSIGHTS INTO NUCLEOTIDE SPECIFICITY, DIMERIZATION, AND cGMP-DEPENDENT CONFORMATIONAL CHANGE

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Crystal structure of the GAF-B domain from human phosphodiesterase 10A complexed with its ligand, cAMP

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Intrinsically disordered -subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure

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Discovery of a series of 6,7-dimethoxy-4-pyrrolidylquinazoline PDE10A inhibitors

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Structural determinants for inhibitor specificity and selectivity in PDE2A using the wheat germ in vitro translation system

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Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules

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20 March 2017

The two GAF domains in phosphodiesterase 2A have distinct roles in dimerization and in cGMP binding

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20 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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NMR View: A computer program for the visualization and analysis of NMR data

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Developments in the CCP4 molecular-graphics project

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Coot: model-building tools for molecular graphics

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Refinement of macromolecular structures by the maximum-likelihood method

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20 March 2017

Maximum-likelihood density modification

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Automated MAD and MIR structure solution

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

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Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

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20 March 2017

Molecular determinants for cyclic nucleotide binding to the regulatory domains of phosphodiesterase 2A

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Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels

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7 April 2017

The CCP4 molecular-graphics project

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533791

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Free methionine-(R)-sulfoxide reductase from Escherichia coli reveals a new GAF domain function

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29 September 2017

Crystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: modes of ligand binding and dimerization

1 reference

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GAF domains: two-billion-year-old molecular switches that bind cyclic nucleotides

1 reference

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29 September 2017

Properties and functions of GAF domains in cyclic nucleotide phosphodiesterases and other proteins

1 reference

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29 September 2017

Binding of cGMP to GAF domains in amphibian rod photoreceptor cGMP phosphodiesterase (PDE). Identification of GAF domains in PDE alphabeta subunits and distinct domains in the PDE gamma subunit involved in stimulation of cGMP binding to GAF domains

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G proteins and phototransduction.

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Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533791

29 September 2017

The GAF domain: an evolutionary link between diverse phototransducing proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533791

29 September 2017

cGMP binding sites on photoreceptor phosphodiesterase: role in feedback regulation of visual transduction.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533791

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Visual transduction in vertebrate rods and cones: a tale of two transmitters, calcium and cyclic GMP.

1 reference

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A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

1 reference

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[3H]sildenafil binding to phosphodiesterase-5 is specific, kinetically heterogeneous, and stimulated by cGMP.

1 reference

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The inhibitory gamma subunit of the rod cGMP phosphodiesterase binds the catalytic subunits in an extended linear structure.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

Direct interaction of the inhibitory gamma-subunit of Rod cGMP phosphodiesterase (PDE6) with the PDE6 GAFa domains.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

Molecular determinants of cGMP binding to chicken cone photoreceptor phosphodiesterase

1 reference

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Three-dimensional structure of non-activated cGMP phosphodiesterase 6 and comparison of its image with those of activated forms

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

Molecular organization of bovine rod cGMP-phosphodiesterase 6.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

The GAFa domains of rod cGMP-phosphodiesterase 6 determine the selectivity of the enzyme dimerization

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

The catalytic and GAF domains of the rod cGMP phosphodiesterase (PDE6) heterodimer are regulated by distinct regions of its inhibitory gamma subunit

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M802891200

21 January 2018

Structural and functional features in human PDE5A1 regulatory domain that provide for allosteric cGMP binding, dimerization, and regulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subunit structure of rod cGMP-phosphodiesterase

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification and characterization of a cyclic GMP-stimulated cyclic nucleotide phosphodiesterase from bovine tissues

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple conformations of phosphodiesterase-5: implications for enzyme function and drug development

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of a bovine cone photoreceptor phosphodiesterase purified by cyclic GMP-sepharose chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural determinants of the PDE6 GAF A domain for binding the inhibitory gamma-subunit and noncatalytic cGMP

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A subset of GAF domains are evolutionarily conserved sodium sensors

1 reference

https://pubmed.ncbi.nlm.nih.gov/18614542

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M802891200

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