Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex (Q27642854)

1

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Steven C DeFina

2

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David M Brackett

3

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Chris Baugh

4

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Charles Wilson

5

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Thorsten Dieckmann

Modulation of RNA function by aminoglycoside antibiotics

6

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publication date

3 January 2004

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published in

ChemBioChem

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volume

5

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issue

1

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page(s)

62-72

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cites work

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Mutant ATP-binding RNA aptamers reveal the structural basis for ligand binding

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Structure, recognition and adaptive binding in RNA aptamer complexes

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Induced fit in RNA-protein recognition

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Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex

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Binding to an RNA aptamer changes the charge distribution and conformation of malachite green

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

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In vitro selection of aptamers: the dearth of pure reason

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In vitro selection of functional nucleic acids

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Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution

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Molecular recognition in the FMN-RNA aptamer complex

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Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy

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Aptamer structures from A to zeta

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Solution structure of the tobramycin-RNA aptamer complex

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Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution

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Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer

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2.8 A crystal structure of the malachite green aptamer

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A water channel in the core of the vitamin B(12) RNA aptamer

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The structural basis for molecular recognition by the vitamin B 12 RNA aptamer

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An mRNA structure that controls gene expression by binding FMN

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

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Genetic control by a metabolite binding mRNA

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Receptor ligand-facilitated cationic liposome delivery of anti-HIV-1 Rev-binding aptamer and ribozyme DNAs.

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Molecular aptamer for real-time oncoprotein platelet-derived growth factor monitoring by fluorescence anisotropy

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Retention and separation of adenosine and analogues by affinity chromatography with an aptamer stationary phase

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Open-tubular capillary electrochromatography of bovine beta-lactoglobulin variants A and B using an aptamer stationary phase

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Aptamer beacons for the direct detection of proteins

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Aptamer-based folding fluorescent sensor for cocaine

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Rev-binding aptamer and CMV promoter act as decoys to inhibit HIV replication

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HIV-1 reverse transcriptase-pseudoknot RNA aptamer interaction has a binding affinity in the low picomolar range coupled with high specificity

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Nucleic acid molecular switches

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An RNA motif that binds ATP.

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Laser-mediated, site-specific inactivation of RNA transcripts

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Assignment methodology for larger RNA oligonucleotides: application to an ATP-binding RNA aptamer

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Two- and three-dimensional HCN experiments for correlating base and sugar resonances in 15N,13C-labeled RNA oligonucleotides

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Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

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Structural domains of transfer RNA molecules

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A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA

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A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase

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A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules

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Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease

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Synthesis of selectively15N- or13C-labelled malachite green

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Allosteric nucleic acid catalysts

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Proton-proton correlation via carbon-carbon couplings: a three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13

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Docking of cationic antibiotics to negatively charged pockets in RNA folds

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Optimization of triple-resonance HCN experiments for application to larger RNA oligonucleotides

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Identifiers

DOI

10.1002/CBIC.200300701

1 reference

Consolidated OpenCitations Corpus – April 2017

772415

772415

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference