A thermodynamic and kinetic analysis of the folding pathway of an SH3 domain entropically stabilised by a redesigned hydrophobic core (Q27640935)

6

0 references

author name string

Vladimir V Filimonov

2

0 references

Maria Cristina Vega

3

0 references

Pedro L Mateo

4

0 references

Luis Serrano

Journal of Molecular Biology

5

0 references

language of work or name

English

0 references

publication date

18 April 2003

0 references

published in

0 references

volume

328

0 references

issue

1

0 references

page(s)

221-33

0 references

cites work

Characterizing transition states in protein folding: an essential step in the puzzle

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Obligatory steps in protein folding and the conformational diversity of the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Thermodynamic analysis of alpha-spectrin SH3 and two of its circular permutants with different loop lengths: discerning the reasons for rapid folding in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Experiment and theory highlight role of native state topology in SH3 folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Computer-based redesign of a protein folding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Submillisecond folding of monomeric lambda repressor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Conformational strain in the hydrophobic core and its implications for protein folding and design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Computational estimation of specific side chain interaction energies in alpha helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Computer-aided design of beta-sheet peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

A Correlation of Reaction Rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Movement of the position of the transition state in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Thermodynamic Analysis of the Structural Stability of Phage 434 Cro Protein†

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Different folding transition states may result in the same native structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Nucleation mechanisms in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Molecular basis of cooperativity in protein folding. V. Thermodynamic and structural conditions for the stabilization of compact denatured states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

A thermodynamic analysis of a family of small globular proteins: SH3 domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

The native state conformational ensemble of the SH3 domain from alpha-spectrin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Contact order, transition state placement and the refolding rates of single domain proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Stabilization of proteins by rational design of alpha-helix stability using helix/coil transition theory.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Folding of circular permutants with decreased contact order: general trend balanced by protein stability 1 1Edited by A. R. Fersht

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Unspecific hydrophobic stabilization of folding transition states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Hydrophobic core packing in the SH3 domain folding transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Robustness of protein folding kinetics to surface hydrophobic substitutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Progressive stabilization of intermediate and transition states in protein folding reactions by introducing surface hydrophobic residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Salt-induced detour through compact regions of the protein folding landscape

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Stabilisation of α-helices by site-directed mutagenesis reveals the importance of secondary structure in the transition state for acylphosphatase folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Favourable native-like helical local interactions can accelerate protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Bergerac-SH3: "frustation" induced by stabilizing the folding nucleus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Single versus parallel pathways of protein folding and fractional formation of structure in the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Protein design based on folding models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Rapid and efficient site-specific mutagenesis without phenotypic selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

T7 vectors with modified T7lac promoter for expression of proteins in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Calculation of protein extinction coefficients from amino acid sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

AMoRe: an automated package for molecular replacement

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0

Non-native local interactions in protein folding and stability: introducing a helical tendency in the all beta-sheet alpha-spectrin SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900273-0