Solution structure and DNA-binding properties of the C-terminal domain of UvrC from E.coli (Q27639934)

6 July 2017

Solution structure and DNA-binding properties of the C-terminal domain of UvrC from E.coli (English)

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6 July 2017

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A M J J Bonvin

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6 July 2017

S Singh

1

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author name string

G E Folkers

2

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6 July 2017

R Boelens

4

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6 July 2017

R Wechselberger

5

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6 July 2017

A Niztayev

6

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6 July 2017

R Kaptein

7

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6 July 2017

language of work or name

English

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publication date

1 November 2002

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6 July 2017

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6 July 2017

21

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22

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6 July 2017

6257-6266

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

6 July 2017

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Crystal structure of the Holliday junction DNA in complex with a single RuvA tetramer

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus

20 March 2017

1 reference

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Crystal structure of NAD+-dependent DNA ligase: modular architecture and functional implications

20 March 2017

1 reference

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Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

20 March 2017

1 reference

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Conserved domains in DNA repair proteins and evolution of repair systems

20 March 2017

1 reference

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Crystal structure of an octameric RuvA-Holliday junction complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis

20 March 2017

1 reference

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Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction

20 March 2017

1 reference

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Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

20 March 2017

1 reference

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NMR View: A computer program for the visualization and analysis of NMR data

20 March 2017

1 reference

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Protein backbone angle restraints from searching a database for chemical shift and sequence homology

20 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

1 reference

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An extensively modified version of MolScript that includes greatly enhanced coloring capabilities

20 March 2017

1 reference

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MOLMOL: a program for display and analysis of macromolecular structures

20 March 2017

1 reference

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VMD: visual molecular dynamics

20 March 2017

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 March 2017

1 reference

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Protein structure comparison by alignment of distance matrices

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Catalytic sites for 3' and 5' incision of Escherichia coli nucleotide excision repair are both located in UvrC

20 March 2017

1 reference

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Architecture of nucleotide excision repair complexes: DNA is wrapped by UvrB before and after damage recognition

20 March 2017

1 reference

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Solution structure of the POU-specific DNA-binding domain of Oct-1

20 March 2017

1 reference

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20 March 2017

1 reference

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Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis

7 April 2017

1 reference

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Common fold in helix-hairpin-helix proteins

7 April 2017

1 reference

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Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

The C-terminal region of the Escherichia coli UvrC protein, which is homologous to the C-terminal region of the human ERCC1 protein, is involved in DNA binding and 5'-incision

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

The C-terminal region of the UvrB protein of Escherichia coli contains an important determinant for UvrC binding to the preincision complex but not the catalytic site for 3'-incision

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Strand opening by the UvrA(2)B complex allows dynamic recognition of DNA damage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Formation of DNA repair intermediates and incision by the ATP-dependent UvrB-UvrC endonuclease.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Active site of (A)BC excinuclease. I. Evidence for 5' incision by UvrC through a catalytic site involving Asp399, Asp438, Asp466, and His538 residues

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Electron microscopic study of (A)BC excinuclease. DNA is sharply bent in the UvrB-DNA complex

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Structure of UvrABC excinuclease-UV-damaged DNA complexes studied by flow linear dichroism. DNA curved by UvrB and UvrC

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137216

Two forms of UvrC protein with different double-stranded DNA binding affinities

2 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

Protein-DNA interactions and alterations in the DNA structure upon UvrB-DNA preincision complex formation during nucleotide excision repair in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

Ambiguous NOEs and automated NOE assignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

Rapid protein fold determination using secondary chemical shifts and cross-hydrogen bond 15N-13C' scalar couplings (3hbJNC')

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

The effect of the DNA flanking the lesion on formation of the UvrB-DNA preincision complex. Mechanism for the UvrA-mediated loading of UvrB onto a DNA damaged site

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

Recognition and repair of 2-aminofluorene- and 2-(acetylamino)fluorene-DNA adducts by UVRABC nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2FCDF627

21 January 2018

Identifiers

DOI

10.1093/EMBOJ/CDF627

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6 July 2017

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6 July 2017

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