Metal ions bound at the active site of the junction-resolving enzyme T7 endonuclease I (Q27639293)

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10 November 2019

title

Metal ions bound at the active site of the junction-resolving enzyme T7 endonuclease I (English)

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10 November 2019

2

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10 November 2019

author name string

Jonathan M Hadden

series ordinal

1

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10 November 2019

Simon E V Phillips

series ordinal

3

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10 November 2019

David M J Lilley

series ordinal

4

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10 November 2019

publication date

1 July 2002

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10 November 2019

language of work or name

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10 November 2019

volume

21

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10 November 2019

issue

13

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10 November 2019

page(s)

3505-3515

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Structure and function of type II restriction endonucleases

10 November 2019

cites work

1 reference

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Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus

20 March 2017

1 reference

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Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition

20 March 2017

1 reference

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Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus

20 March 2017

1 reference

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Unexpected structural diversity in DNA recombination: the restriction endonuclease connection

20 March 2017

1 reference

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Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution

20 March 2017

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X-ray structure of T4 endonuclease VII: a DNA junction resolvase with a novel fold and unusual domain-swapped dimer architecture

20 March 2017

1 reference

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Structure of PvuII endonuclease with cognate DNA

20 March 2017

1 reference

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Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli

20 March 2017

1 reference

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Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution

20 March 2017

1 reference

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Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

20 March 2017

1 reference

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The CCP4 suite: programs for protein crystallography

20 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

1 reference

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Rapid measurement of binding constants and heats of binding using a new titration calorimeter

20 March 2017

1 reference

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The junction-resolving enzymes.

7 April 2017

1 reference

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Branch migration and Holliday junction resolution catalyzed by activities from mammalian cells

29 September 2017

1 reference

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Resolving the relationships of resolving enzymes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Bacterial-type DNA holliday junction resolvases in eukaryotic viruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

A Holliday junction resolvase from Pyrococcus furiosus: functional similarity to Escherichia coli RuvC provides evidence for conserved mechanism of homologous recombination in Bacteria, Eukarya, and Archaea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Catalytic and binding mutants of the junction-resolving enzyme endonuclease I of bacteriophage t7: role of acidic residues

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Structural, functional, and evolutionary relationships between λ-exonuclease and the type II restriction endonucleases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Structural recognition and distortion by the DNA junction-resolving enzyme RusA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Characterization of a Holliday Junction-Resolving Enzyme from Schizosaccharomyces pombe

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase.

29 September 2017

1 reference

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Partial purification of an enzyme from Saccharomyces cerevisiae that cleaves Holliday junctions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Resolution of Holliday junctions in vitro requires the Escherichia coli ruvC gene product

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: separation of binding and catalysis by mutation

29 September 2017

1 reference

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The active site of the junction-resolving enzyme T7 endonuclease I.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

An archaeal Holliday junction resolving enzyme from Sulfolobus solfataricus exhibits unique properties

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Identification of three aspartic acid residues essential for catalysis by the RusA holliday junction resolvase

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

Purification and properties of a nuclease from Saccharomyces cerevisiae that cleaves DNA at cruciform junctions

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126086

T4 endonuclease VII. Importance of a histidine-aspartate cluster within the zinc-binding domain

27 November 2018

1 reference

12 December 2020

Studies on T4-head maturation. 1. Purification and characterization of gene-49-controlled endonuclease

1 reference

12 December 2020

Metal-ion stoichiometry of the HIV-1 RT ribonuclease H domain: evidence for two mutually exclusive sites leads to new mechanistic insights on metal-mediated hydrolysis in nucleic acid biochemistry

1 reference

12 December 2020

Quantitative evaluation of metal ion binding to PvuII restriction endonuclease

1 reference

12 December 2020

Enzymes and sites of genetic recombination: studies with gene-3 endonuclease of phage T7 and with site-affinity mutants of phage lambda

1 reference

12 December 2020

Quantitation of Metal Ion and DNA Junction Binding to the Holliday Junction Endonuclease Cce1†

1 reference

12 December 2020

Site-directed Mutagenesis of the Yeast Resolving Enzyme Cce1 Reveals Catalytic Residues and Relationship with the Intron-splicing Factor Mrs1

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/CDF337

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12093751%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

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10 November 2019

PubMed publication ID

12093751

2 references