Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes (Q27477943)

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scientific article (publication date: 14 December 2006)

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English	Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes	scientific article (publication date: 14 December 2006)

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scholarly article

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23 December 2019

Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes (English)

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23 December 2019

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Hepatitis C virus

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Peter T. Hraber

1

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23 December 2019

2

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23 December 2019

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Thomas Leitner

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23 December 2019

author name string

William J Bruno

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23 December 2019

Carla Kuiken

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23 December 2019

publication date

14 December 2006

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23 December 2019

Virology Journal

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23 December 2019

3

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23 December 2019

103

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23 December 2019

1

0 references

https://scigraph.springernature.com/pub.10.1186/1743-422x-3-103

0 references

Serendipitous identification of natural intergenotypic recombinants of hepatitis C in Ireland

1 reference

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21 March 2017

Unique NS5b hepatitis C virus gene sequence consensus database is essential for standardization of genotype determinations in multicenter epidemiological studies

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21 March 2017

Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells

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21 March 2017

Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence

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21 March 2017

Comparison of Hepatitis C Virus Genotyping by 5' Noncoding Region- and Core-Based Reverse Transcriptase PCR Assay with Sequencing and Use of the Assay for Determining Subtype Distribution in India

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Laboratory Assays for Diagnosis and Management of Hepatitis C Virus Infection

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21 March 2017

Hepatitis C virus genotyping: interrogation of the 5' untranslated region cannot accurately distinguish genotypes 1a and 1b

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions.

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21 March 2017

Comparative study of three methods for genotyping hepatitis C virus strains in samples from Spanish patients

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21 March 2017

Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes

1 reference

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21 March 2017

Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Hepatitis C virus infection

1 reference

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21 March 2017

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Likelihood-based tests of topologies in phylogenetics

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

21 March 2017

Genetic diversity and evolution of hepatitis C virus--15 years on

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

7 April 2017

Peginterferon-alpha2a and ribavirin combination therapy in chronic hepatitis C: a randomized study of treatment duration and ribavirin dose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

7 April 2017

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

1 reference

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7 April 2017

Molecular methods of hepatitis C genotyping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

29 September 2017

Comparison of hepatitis C virus NS5b and 5' noncoding gene sequencing methods in a multicenter study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

29 September 2017

Conserved RNA secondary structures in Flaviviridae genomes

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29 September 2017

Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences

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29 September 2017

Outcome of liver disease in a large cohort of histologically proven chronic hepatitis C: influence of HCV genotype.

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29 September 2017

Hepatitis C virus genotyping based on 5' noncoding sequence analysis (Trugene).

1 reference

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29 September 2017

Variability of hepatitis C virus

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29 September 2017

Analysis of a new hepatitis C virus type and its phylogenetic relationship to existing variants

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29 September 2017

Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1764733

2 June 2018

Sequence variability in the 5' non-coding region of hepatitis C virus: identification of a new virus type and restrictions on sequence diversity.

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2 June 2018

Molecular evolution of the hepatitis B virus genome

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2 June 2018

Intra-host evolutionary dynamics of hepatitis C virus E2 in treated patients

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27 November 2018

The Los Alamos hepatitis C sequence database

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27 November 2018

Evidence of intratypic recombination in natural populations of hepatitis C virus.

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27 November 2018

Sampling and repeatability in the evaluation of hepatitis C virus genetic variability.

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27 November 2018

Determining hepatitis C genotype by analyzing the sequence of the NS5b region

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27 November 2018

Selecting the best-fit model of nucleotide substitution.

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27 November 2018

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

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27 November 2018

Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome.

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27 November 2018

The origin of hepatitis C virus genotypes.

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27 November 2018

Evaluation of complete genome sequences and sequences of individual gene products for the classification of hepatitis C viruses

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27 November 2018

Los Alamos Hepatitis C Immunology Database

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION

1 reference

https://pubmed.ncbi.nlm.nih.gov/17169155

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1743-422X-3-103

1 reference

Europe PubMed Central

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23 December 2019

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1743-422x-3-103

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17169155%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17169155%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

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