Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype (Q27320149)

11

Magnus Fontes

0 references

Antonio V Bordería

Antonio V Bordería

1

0 references

Marco Vignuzzi

Marco Vignuzzi

13

0 references

Andrés Alcover

Andrés Alcover

9

0 references

Susan Hafenstein

10

Susan Hafenstein

0 references

Noam Shomron

12

Noam Shomron

0 references

Hervé Blanc

8

Hervé Blanc

0 references

Nina F Gnädig

7

Nina F Gnädig

0 references

author name string

Ofer Isakov

2

0 references

Rasmus Henningsson

4

0 references

Sonia Agüera-González

5

0 references

Lindsey Organtini

6

0 references

Magnus Fontes

Creative Commons Attribution 4.0 International

11

0 references

language of work or name

English

0 references

publication date

May 2015

0 references

published in

PLOS Pathogens

0 references

volume

11

0 references

page(s)

e1004838

0 references

issue

5

0 references

copyright license

start time

5 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4420505/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Bayes' theorem

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/4420505

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Interaction of Decay-Accelerating Factor with Coxsackievirus B3

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

The coxsackievirus and adenovirus receptor is a transmembrane component of the tight junction

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Isolation of a common receptor for Coxsackie B viruses and adenoviruses 2 and 5

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

A decade after SARS: strategies for controlling emerging coronaviruses

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Mutational and fitness landscapes of an RNA virus revealed through population sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Closing the gap: the challenges in converging theoretical, computational, experimental and real-life studies in virus evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Single amino acid changes in the virus capsid permit coxsackievirus B3 to bind decay-accelerating factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Beneficial mutations and the dynamics of adaptation in asexual populations.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Intrahost evolutionary dynamics of canine influenza virus in naive and partially immune dogs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Label-free detection of biomolecular interactions using BioLayer interferometry for kinetic characterization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Interaction with decay-accelerating factor facilitates coxsackievirus B infection of polarized epithelial cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Evolvability of an RNA virus is determined by its mutational neighbourhood

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Clonal interference and the evolution of RNA viruses.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Coxsackievirus B3 adapted to growth in RD cells binds to decay-accelerating factor (CD55).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Complete nucleotide sequence of infectious Coxsackievirus B3 cDNA: two initial 5' uridine residues are regained during plus-strand RNA synthesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Substitutions near the receptor binding site determine major antigenic change during influenza virus evolution

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Nucleotide sequence heterogeneity of an RNA phage population.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420505

Multihost experimental evolution of a plant RNA virus reveals local adaptation and host-specific mutations

31 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1004838

Ultradeep sequencing analysis of population dynamics of virus escape mutants in RNAi-mediated resistant plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1004838

A real-time RT-PCR assay for quantifying the fitness of tobacco etch virus in competition experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1004838

Virus-induced Abl and Fyn kinase signals permit coxsackievirus entry through epithelial tight junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1004838

Clonal interference is alleviated by high mutation rates in large populations

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25941809

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1004838

1 reference

1532287

1532287

1 reference

1 reference

1 reference