Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes (Q26998594)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

review article

1 reference

title

Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

2

1 reference

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28 February 2020

Magdalena Villarroya

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

M Eugenia Armengod

1

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Silvia Prado

4

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Ismaïl Moukadiri

5

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Rafael Ruiz-Partida

6

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

M José Garzón

7

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Carmen Navarro-González

8

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Ana Martínez-Zamora

9

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

language of work or name

1 reference

1 January 2014

1 reference

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28 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

11

2 references

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28 February 2020

page(s)

1495-1507

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

issue

12

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

Biosynthesis and functions of sulfur modifications in tRNA

28 February 2020

cites work

1 reference

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Posttranscriptional RNA Modifications: playing metabolic games in a cell's chemical Legoland

21 March 2017

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Mitochondrial signaling: forwards, backwards, and in between

21 March 2017

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Control of protein synthesis in yeast mitochondria: the concept of translational activators

21 March 2017

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Human mitochondrial diseases caused by lack of taurine modification in mitochondrial tRNAs

21 March 2017

1 reference

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Mutations in MTFMT underlie a human disorder of formylation causing impaired mitochondrial translation

21 March 2017

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Mitochondrial translation and beyond: processes implicated in combined oxidative phosphorylation deficiencies

21 March 2017

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Mutations in MTO2 related to tRNA modification impair mitochondrial gene expression and protein synthesis in the presence of a paromomycin resistance mutation in mitochondrial 15 S rRNA

21 March 2017

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Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA).

21 March 2017

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A human mitochondrial GTP binding protein related to tRNA modification may modulate phenotypic expression of the deafness-associated mitochondrial 12S rRNA mutation

21 March 2017

1 reference

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Improvement of reading frame maintenance is a common function for several tRNA modifications

21 March 2017

1 reference

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The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL

21 March 2017

1 reference

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Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC

21 March 2017

1 reference

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Characterization and Structure of the Aquifex aeolicus Protein DUF752: A BACTERIAL tRNA-METHYLTRANSFERASE (MnmC2) FUNCTIONING WITHOUT THE USUALLY FUSED OXIDASE DOMAIN (MnmC1)

21 March 2017

1 reference

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Crystal structure of the bifunctional tRNA modification enzyme MnmC from Escherichia coli

21 March 2017

1 reference

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Structural Basis for Fe–S Cluster Assembly and tRNA Thiolation Mediated by IscS Protein–Protein Interactions

21 March 2017

1 reference

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Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.

21 March 2017

1 reference

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A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast

21 March 2017

1 reference

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Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis.

21 March 2017

1 reference

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Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases

21 March 2017

1 reference

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Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme

21 March 2017

1 reference

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MTO1 codes for a mitochondrial protein required for respiration in paromomycin-resistant mutants of Saccharomyces cerevisiae.

21 March 2017

1 reference

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MSS1, a nuclear-encoded mitochondrial GTPase involved in the expression of COX1 subunit of cytochrome c oxidase

21 March 2017

1 reference

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A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesis

21 March 2017

1 reference

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Isolation and characterization of the putative nuclear modifier gene MTO1 involved in the pathogenesis of deafness-associated mitochondrial 12 S rRNA A1555G mutation

21 March 2017

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Pseudouridine in RNA: what, where, how, and why

21 March 2017

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Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator

21 March 2017

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Translational misreading: a tRNA modification counteracts a +2 ribosomal frameshift

21 March 2017

1 reference

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A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA

21 March 2017

1 reference

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A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress

21 March 2017

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Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli

21 March 2017

1 reference

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Loss of a conserved tRNA anticodon modification perturbs cellular signaling

21 March 2017

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Taurine as a constituent of mitochondrial tRNAs: new insights into the functions of taurine and human mitochondrial diseases

21 March 2017

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tRNA biology charges to the front

21 March 2017

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Transfer RNA and human disease

7 April 2017

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A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs

28 September 2017

1 reference

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Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism

28 September 2017

1 reference

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SAXS analysis of the tRNA-modifying enzyme complex MnmE/MnmG reveals a novel interaction mode and GTP-induced oligomerization

28 September 2017

1 reference

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Role of tRNA modifications in human diseases

28 September 2017

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Mixing and matching mitochondrial aminoacyl synthetases and their tRNAs: a new way to treat respiratory chain disorders?

28 September 2017

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Mitochondria: impaired mitochondrial translation in human disease

28 September 2017

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The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species.

28 September 2017

1 reference

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MTO1 mutations are associated with hypertrophic cardiomyopathy and lactic acidosis and cause respiratory chain deficiency in humans and yeast

28 September 2017

1 reference

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Modification of tRNA(Lys) UUU by elongator is essential for efficient translation of stress mRNAs.

28 September 2017

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Altered 2-thiouridylation impairs mitochondrial translation in reversible infantile respiratory chain deficiency

28 September 2017

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The phenotype of many independently isolated +1 frameshift suppressor mutants supports a pivotal role of the P-site in reading frame maintenance

28 September 2017

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Neuromuscular and systemic presentations in adults: diagnoses beyond MERRF and MELAS

28 September 2017

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Native tertiary structure and nucleoside modifications suppress tRNA's intrinsic ability to activate the innate immune sensor PKR.

28 September 2017

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Essential nontranslational functions of tRNA synthetases

28 September 2017

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Biosynthesis and function of posttranscriptional modifications of transfer RNAs

28 September 2017

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The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy.

28 September 2017

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Molecular evolution of dihydrouridine synthases

28 September 2017

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Enzymology of tRNA modification in the bacterial MnmEG pathway.

28 September 2017

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Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity

28 September 2017

1 reference

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Unexpected functions of tRNA and tRNA processing enzymes

28 September 2017

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Nuclear factors involved in mitochondrial translation cause a subgroup of combined respiratory chain deficiency

28 September 2017

1 reference

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YibK is the 2'-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNA(Leu) isoacceptors

28 September 2017

1 reference

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tRNA stabilization by modified nucleotides

28 September 2017

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Human mitochondrial mRNAs--like members of all families, similar but different

28 September 2017

1 reference

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Combination of the loss of cmnm5U34 with the lack of s2U34 modifications of tRNALys, tRNAGlu, and tRNAGln altered mitochondrial biogenesis and respiration

28 September 2017

1 reference

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Acute infantile liver failure due to mutations in the TRMU gene.

28 September 2017

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OXPHOS gene expression and control in mitochondrial disorders.

28 September 2017

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Multiple conformational switches in a GTPase complex control co-translational protein targeting

28 September 2017

1 reference

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Characterization of human GTPBP3, a GTP-binding protein involved in mitochondrial tRNA modification

28 September 2017

1 reference

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Eukaryotic wobble uridine modifications promote a functionally redundant decoding system.

28 September 2017

1 reference

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The wobble hypothesis revisited: uridine-5-oxyacetic acid is critical for reading of G-ending codons

28 September 2017

1 reference

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Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

28 September 2017

1 reference

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Acquisition of the wobble modification in mitochondrial tRNALeu(CUN) bearing the G12300A mutation suppresses the MELAS molecular defect.

28 September 2017

1 reference

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Enhanced ROS production and antioxidant defenses in cybrids harbouring mutations in mtDNA.

28 September 2017

1 reference

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Identification and functional characterization of the candidate tumor suppressor gene TRIT1 in human lung cancer

28 September 2017

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The structure of the TrmE GTP-binding protein and its implications for tRNA modification

28 September 2017

1 reference

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The Era-like GTPase TrmE conditionally activates gadE and glutamate-dependent acid resistance in Escherichia coli.

28 September 2017

1 reference

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Identification of a bifunctional enzyme MnmC involved in the biosynthesis of a hypermodified uridine in the wobble position of tRNA

28 September 2017

1 reference

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Requirement for IscS in biosynthesis of all thionucleosides in Escherichia coli

28 September 2017

1 reference

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Three modifications in the D and T arms of tRNA influence translation in Escherichia coli and expression of virulence genes in Shigella flexneri

28 September 2017

1 reference

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Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine

28 September 2017

1 reference

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Antisuppressor mutation in Escherichia coli defective in biosynthesis of 5-methylaminomethyl-2-thiouridine

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon

28 September 2017

1 reference

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Near-UV stress in Salmonella typhimurium: 4-thiouridine in tRNA, ppGpp, and ApppGpp as components of an adaptive response

28 September 2017

1 reference

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The tRNA-modifying function of MnmE is controlled by post-hydrolysis steps of its GTPase cycle

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Mutations of the mitochondrial-tRNA modifier MTO1 cause hypertrophic cardiomyopathy and lactic acidosis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The CDK5 repressor CDK5RAP1 is a methylthiotransferase acting on nuclear and mitochondrial RNA

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Comprehensive genomic analysis of sulfur-relay pathway genes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Mutation in MTO1 involved in tRNA modification impairs mitochondrial RNA metabolism in the yeast Saccharomyces cerevisiae

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

A previously unidentified activity of yeast and mouse RNA:pseudouridine synthases 1 (Pus1p) on tRNAs

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Structural alterations of the cysteine desulfurase IscS of Salmonella enterica serovar Typhimurium reveal substrate specificity of IscS in tRNA thiolation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAPro(cmo5UGG) promotes reading of all four proline codons in vivo

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The Escherichia coli trmE (mnmE) gene, involved in tRNA modification, codes for an evolutionarily conserved GTPase with unusual biochemical properties

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Defective kinetics of cytochrome c oxidase and alteration of mitochondrial membrane potential in fibroblasts and cytoplasmic hybrid cells with the mutation for myoclonus epilepsy with ragged-red fibres ('MERRF') at position 8344 nt.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Undermodification in the first position of the anticodon of supG-tRNA reduces translational efficiency

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Transfer RNA Modification.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The ROS-sensitive microRNA-9/9* controls the expression of mitochondrial tRNA-modifying enzymes and is involved in the molecular mechanism of MELAS syndrome.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

A systems approach for decoding mitochondrial retrograde signaling pathways.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

tRNA modifications: Necessary for correct tRNA-derived fragments during the recovery from stress?

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Isoleucyl-tRNA synthetase levels modulate the penetrance of a homoplasmic m.4277T>C mitochondrial tRNA(Ile) mutation causing hypertrophic cardiomyopathy.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The 2-thiouridylase function of the human MTU1 (TRMU) enzyme is dispensable for mitochondrial translation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

G-domain dimerization orchestrates the tRNA wobble modification reaction in the MnmE/GidA complex.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Snapshots of tRNA sulphuration via an adenylated intermediate.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Effects of mutagenesis in the switch I region and conserved arginines of Escherichia coli MnmE protein, a GTPase involved in tRNA modification.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

Wobble modification deficiency in mutant tRNAs in patients with mitochondrial diseases.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The role of modifications in codon discrimination by tRNA(Lys)UUU.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

The GTPase activity and C-terminal cysteine of the Escherichia coli MnmE protein are essential for its tRNA modifying function.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

MtDNA mutation in MERRF syndrome causes defective aminoacylation of tRNA(Lys) and premature translation termination

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4615368

A tRNA suppressor mutation in human mitochondria

28 November 2018

1 reference

12 December 2020

Complex I deficiency is associated with 3243G:C mitochondrial DNA in osteosarcoma cell cybrids

1 reference

12 December 2020

Reduced misreading of asparagine codons by Escherichia coli tRNALys with hypomodified derivatives of 5-methylaminomethyl-2-thiouridine in the wobble position

1 reference

12 December 2020

The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo

1 reference

12 December 2020

10.4161/15476286.2014.992269

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25607529%20AND%20SRC:MED&resulttype=core&format=json