Prp40 and early events in splice site definition (Q26780366)

5

0 references

author name string

Soraya Becerra

1

0 references

Eduardo Andrés-León

2

0 references

Silvia Prieto-Sánchez

3

0 references

Cristina Hernández-Munain

4

0 references

Carlos Suñé

5

0 references

language of work or name

English

0 references

publication date

2016

1 reference

Wiley interdisciplinary reviews. RNA

PubMed

published in

1 reference

The spliceosome: design principles of a dynamic RNP machine

PubMed

volume

7

0 references

page(s)

17-32

0 references

issue

1

0 references

cites work

1 reference

A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition

21 January 2018

1 reference

The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

21 January 2018

1 reference

Dynamic association of proteins with the pre-mRNA branch region

21 January 2018

1 reference

A day in the life of the spliceosome

21 January 2018

1 reference

A compensatory base change in U1 snRNA suppresses a 5' splice site mutation

21 January 2018

1 reference

5' splice site selection in yeast: genetic alterations in base-pairing with U1 reveal additional requirements

21 January 2018

1 reference

Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex

21 January 2018

1 reference

A nuclear cap-binding complex facilitates association of U1 snRNP with the cap-proximal 5' splice site.

21 January 2018

1 reference

Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution

21 January 2018

1 reference

Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition

21 January 2018

1 reference

The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing

21 January 2018

1 reference

Widespread recognition of 5' splice sites by noncanonical base-pairing to U1 snRNA involving bulged nucleotides

21 January 2018

1 reference

Recognition of atypical 5' splice sites by shifted base-pairing to U1 snRNA.

21 January 2018

1 reference

Cloning and domain structure of the mammalian splicing factor U2AF

21 January 2018

1 reference

Splicing factors SF1 and U2AF associate in extraspliceosomal complexes

21 January 2018

1 reference

Pre-spliceosome formation in S.pombe requires a stable complex of SF1-U2AF(59)-U2AF(23)

21 January 2018

1 reference

Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A

21 January 2018

1 reference

Characterization of a U2AF-independent commitment complex (E') in the mammalian spliceosome assembly pathway

21 January 2018

1 reference

Mechanisms of alternative pre-messenger RNA splicing

21 January 2018

1 reference

The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites

21 January 2018

1 reference

Interaction of the U1 snRNP with nonconserved intronic sequences affects 5' splice site selection.

21 January 2018

1 reference

A survey on intron and exon lengths

21 January 2018

1 reference

Exon definition may facilitate splice site selection in RNAs with multiple exons

21 January 2018

1 reference

Does steric interference between splice sites block the splicing of a short c-src neuron-specific exon in non-neuronal cells?

21 January 2018

1 reference

Selection of splice sites in pre-mRNAs with short internal exons

21 January 2018

1 reference

Architectural limits on split genes

21 January 2018

1 reference

Species-specific signals for the splicing of a short Drosophila intron in vitro

21 January 2018

1 reference

Intron definition in splicing of small Drosophila introns

21 January 2018

1 reference

Exon recognition in vertebrate splicing

21 January 2018

1 reference

RBM5/Luca-15/H37 regulates Fas alternative splice site pairing after exon definition.

21 January 2018

1 reference

Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome

21 January 2018

1 reference

Exon and intron definition in pre-mRNA splicing

21 January 2018

1 reference

WW and SH3 domains, two different scaffolds to recognize proline-rich ligands

21 January 2018

1 reference

Identification of Prp40, a novel essential yeast splicing factor associated with the U1 small nuclear ribonucleoprotein particle

21 January 2018

1 reference

Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals

21 January 2018

1 reference

TPR proteins: the versatile helix

21 January 2018

1 reference

Yeast ortholog of the Drosophila crooked neck protein promotes spliceosome assembly through stable U4/U6.U5 snRNP addition

21 January 2018

1 reference

The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts

21 January 2018

1 reference

Structural requirement of Ntc77 for spliceosome activation and first catalytic step

21 January 2018

1 reference

Pre-mRNA processing reaches back to transcription and ahead to translation

21 January 2018

1 reference

Pause locally, splice globally

21 January 2018

1 reference

Functional coupling of transcription and splicing

21 January 2018

1 reference

FBP11 regulates nuclear localization of N-WASP and inhibits N-WASP-dependent microspike formation

21 January 2018

1 reference

The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo

21 January 2018

1 reference

Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs.

21 January 2018

1 reference

Stalling of spliceosome assembly at distinct stages by small-molecule inhibitors of protein acetylation and deacetylation

21 January 2018

1 reference

Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly

21 January 2018

1 reference

Prp40 pre-mRNA processing factor 40 homolog B (PRPF40B) associates with SF1 and U2AF65 and modulates alternative pre-mRNA splicing in vivo

21 January 2018

1 reference

CA150, a nuclear protein associated with the RNA polymerase II holoenzyme, is involved in Tat-activated human immunodeficiency virus type 1 transcription

21 January 2018

1 reference

The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1

21 January 2018

1 reference

Human transcription elongation factor CA150 localizes to splicing factor-rich nuclear speckles and assembles transcription and splicing components into complexes through its amino and carboxyl regions.

21 January 2018

1 reference

FF domains of CA150 bind transcription and splicing factors through multiple weak interactions

21 January 2018

1 reference

Stimulatory effect of splicing factors on transcriptional elongation

21 January 2018

1 reference

The arginine methyltransferase CARM1 regulates the coupling of transcription and mRNA processing.

21 January 2018

1 reference

Identification of the cellular targets of the transcription factor TCERG1 reveals a prevalent role in mRNA processing.

21 January 2018

1 reference

Differential effects of sumoylation on transcription and alternative splicing by transcription elongation regulator 1 (TCERG1).

21 January 2018

1 reference

The FF4 and FF5 domains of transcription elongation regulator 1 (TCERG1) target proteins to the periphery of speckles

21 January 2018

1 reference

TCERG1 regulates alternative splicing of the Bcl-x gene by modulating the rate of RNA polymerase II transcription.

21 January 2018

1 reference

The carboxy terminal domain of RNA polymerase II and alternative splicing

21 January 2018

1 reference

Phosphorylation and functions of the RNA polymerase II CTD

21 January 2018

1 reference

Dynamic integration of splicing within gene regulatory pathways

21 January 2018

1 reference

21 January 2018

1 reference

Updating the RNA polymerase CTD code: adding gene-specific layers

21 January 2018

1 reference

The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.

21 January 2018

1 reference

Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing

21 January 2018

1 reference

Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD

21 January 2018

1 reference

Role for PSF in mediating transcriptional activator-dependent stimulation of pre-mRNA processing in vivo

21 January 2018

1 reference

The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex

21 January 2018

1 reference

Protein-interaction modules that organize nuclear function: FF domains of CA150 bind the phosphoCTD of RNA polymerase II

21 January 2018

1 reference

Specific Interaction of the Transcription Elongation Regulator TCERG1 with RNA Polymerase II Requires Simultaneous Phosphorylation at Ser2, Ser5, and Ser7 within the Carboxyl-terminal Domain Repeat

21 January 2018

1 reference

The RNA polymerase C-terminal domain: a new role in spliceosome assembly

21 January 2018

1 reference

Gene-specific RNA polymerase II phosphorylation and the CTD code

21 January 2018

1 reference

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

21 January 2018

1 reference

A slow RNA polymerase II affects alternative splicing in vivo

21 January 2018

1 reference

Transcriptional control of alternative splicing along time: ideas change, experiments remain.

21 January 2018

1 reference

Differential chromatin marking of introns and expressed exons by H3K36me3.

21 January 2018

1 reference

Nucleosomes are well positioned in exons and carry characteristic histone modifications

21 January 2018

1 reference

Biased chromatin signatures around polyadenylation sites and exons

21 January 2018

1 reference

Nucleosome positioning as a determinant of exon recognition

21 January 2018

1 reference

Reciprocal intronic and exonic histone modification regions in humans.

21 January 2018

1 reference

Regulation of alternative splicing by histone modifications

21 January 2018

1 reference

Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain

21 January 2018

1 reference

The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71.

21 January 2018

1 reference

The structure of an FF domain from human HYPA/FBP11

21 January 2018

1 reference

UniProt: a hub for protein information

21 January 2018

1 reference

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

21 January 2018

1 reference

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

An improved general amino acid replacement matrix

21 January 2018

1 reference

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

Selection in the evolution of gene duplications

21 January 2018

1 reference

Turning a hobby into a job: how duplicated genes find new functions

21 January 2018

1 reference

Splicing in disease: disruption of the splicing code and the decoding machinery

21 January 2018

1 reference

Functional roles of alternative splicing factors in human disease

21 January 2018

1 reference

A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes.

21 January 2018

1 reference

The Gln-Ala repeat transcriptional activator CA150 interacts with huntingtin: neuropathologic and genetic evidence for a role in Huntington's disease pathogenesis

21 January 2018

1 reference

CA150 expression delays striatal cell death in overexpression and knock-in conditions for mutant huntingtin neurotoxicity.

21 January 2018

1 reference

Huntingtin's WW domain partners in Huntington's disease post-mortem brain fulfill genetic criteria for direct involvement in Huntington's disease pathogenesis

21 January 2018

1 reference

Huntingtin interacts with a family of WW domain proteins

21 January 2018

1 reference

Identification and characterization of a set of conserved and new regulators of cytoskeletal organization, cell morphology and migration

21 January 2018

1 reference

Aberrant splicing of HTT generates the pathogenic exon 1 protein in Huntington disease

21 January 2018

1 reference

Dual-specificity tyrosine phosphorylation-regulated kinase 1A (Dyrk1A) modulates serine/arginine-rich protein 55 (SRp55)-promoted Tau exon 10 inclusion

21 January 2018

1 reference

Huntington's disease is a four-repeat tauopathy with tau nuclear rods.

21 January 2018

1 reference

Specific mutations in methyl-CpG-binding protein 2 confer different severity in Rett syndrome.

21 January 2018

1 reference

Rett syndrome: recent research progress

21 January 2018

1 reference

Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA

21 January 2018

1 reference

MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin

21 January 2018

1 reference

A matrix/scaffold attachment region binding protein: Identification, purification, and mode of binding

21 January 2018

1 reference

The molecular pathology of Rett syndrome: synopsis and update

21 January 2018

1 reference

Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.

21 January 2018

1 reference

A brain-derived MeCP2 complex supports a role for MeCP2 in RNA processing

21 January 2018

1 reference

FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligands

21 January 2018

1 reference

A WW domain binding region in methyl-CpG-binding protein MeCP2: impact on Rett syndrome

21 January 2018

1 reference

Frequent pathway mutations of splicing machinery in myelodysplasia

21 January 2018

1 reference

Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts

21 January 2018

1 reference

The spliceosome as an indicted conspirator in myeloid malignancies

21 January 2018

1 reference

Chromatin organization marks exon-intron structure

21 January 2018

1 reference

The Structure of Prp40 FF1 Domain and Its Interaction with the crn-TPR1 Motif of Clf1 Gives a New Insight into the Binding Mode of FF Domains

21 January 2018

1 reference

A U1 snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5' cleavage site.

21 January 2018

1 reference

7 January 2021

The pathobiology of splicing

1 reference

7 January 2021

MAFFT: iterative refinement and additional methods

1 reference

7 January 2021

The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro

1 reference

7 January 2021

Positive patches and negative noodles: linking RNA processing to transcription?

1 reference

7 January 2021

The FF domain: a novel motif that often accompanies WW domains

1 reference

7 January 2021

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

7 January 2021

Interaction of U2AF65 RS region with pre-mRNA branch point and promotion of base pairing with U2 snRNA [corrected]

1 reference

7 January 2021

Isolation of S. cerevisiae snRNPs: comparison of U1 and U4/U6.U5 to their human counterparts

1 reference

7 January 2021