Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis (Q25257570)

22 June 2017

Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis (English)

1 reference

22 June 2017

1 reference

3

Janusz M Bujnicki

1 reference

22 June 2017

1

Karolina L Tkaczuk

1 reference

22 June 2017

Agnieszka Obarska

2

1 reference

PubMed ID

16433904

22 June 2017

language of work or name

English

0 references

publication date

24 January 2006

1 reference

22 June 2017

BMC Evolutionary Biology

1 reference

22 June 2017

6

1 reference

22 June 2017

1

0 references

page(s)

6

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-6-6

22 June 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-6-6

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Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA

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A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing

7 April 2017

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Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9.

7 April 2017

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Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop

7 April 2017

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Protein homology detection by HMM-HMM comparison

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CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

7 April 2017

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7 April 2017

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7 April 2017

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MicroRNA biogenesis: coordinated cropping and dicing

7 April 2017

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7 April 2017

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28 September 2017

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MicroRNA biogenesis and function in plants

28 September 2017

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Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

28 September 2017

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Plant and animal microRNAs: similarities and differences.

28 September 2017

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MicroRNA biogenesis and cancer

28 September 2017

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Natively disordered proteins: functions and predictions

28 September 2017

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The developmental role of microRNA in plants

28 September 2017

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Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes

28 September 2017

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28 September 2017

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Accurate prediction of solvent accessibility using neural networks-based regression.

28 September 2017

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28 September 2017

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N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota

28 September 2017

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Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases

28 September 2017

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28 September 2017

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The DISOPRED server for the prediction of protein disorder

28 September 2017

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A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase

28 September 2017

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Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase

28 September 2017

1 reference

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Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

28 September 2017

1 reference

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A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation

28 September 2017

1 reference

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Coupled prediction of protein secondary and tertiary structure

28 September 2017

1 reference

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Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

GeneSilico protein structure prediction meta-server.

28 September 2017

1 reference

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Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Active site in RrmJ, a heat shock-induced methyltransferase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Pcons: a neural-network-based consensus predictor that improves fold recognition.

28 September 2017

1 reference

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Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts

28 September 2017

1 reference

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Protein database searches for multiple alignments

28 September 2017

1 reference

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Split decomposition: a new and useful approach to phylogenetic analysis of distance data

28 September 2017

1 reference

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Methylation as a crucial step in plant microRNA biogenesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Cascaded multiple classifiers for secondary structure prediction

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Comparison of sequence profiles. Strategies for structural predictions using sequence information

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Distinct origins of tRNA(m1G37) methyltransferase

28 November 2018

1 reference

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Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Mechanism of RNA 2'-O-methylation: evidence that the catalytic lysine acts to steer rather than deprotonate the target nucleophile

28 November 2018

1 reference

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Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Hybrid fold recognition: combining sequence derived properties with evolutionary information.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1397878

Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16433904

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purified lupus antigen La recognizes an oligouridylate stretch common to the 3' termini of RNA polymerase III transcripts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16433904

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimizing long intrinsic disorder predictors with protein evolutionary information

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16433904

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-6-6

1 reference

PubMed ID

16433904

Dimensions Publication ID

22 June 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-6-6

0 references

1 reference

PubMed ID

16433904